View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6316_low_21 (Length: 262)

Name: NF6316_low_21
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6316_low_21
NF6316_low_21
[»] chr7 (12 HSPs)
chr7 (18-252)||(29453852-29454080)
chr7 (176-252)||(29430717-29430793)
chr7 (37-86)||(29430901-29430950)
chr7 (211-248)||(29881572-29881609)
chr7 (211-247)||(29445356-29445392)
chr7 (211-244)||(29476043-29476076)
chr7 (211-248)||(29872029-29872066)
chr7 (198-239)||(29899671-29899712)
chr7 (110-158)||(19604288-19604336)
chr7 (110-154)||(29445470-29445514)
chr7 (114-146)||(29895645-29895677)
chr7 (211-247)||(29921723-29921759)
[»] chr1 (2 HSPs)
chr1 (110-154)||(17560605-17560649)
chr1 (110-156)||(4366325-4366371)
[»] chr2 (1 HSPs)
chr2 (109-146)||(18913370-18913407)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 29454080 - 29453852
Alignment:
Q  18 actactacatggcaactcaattggtgccgttgcttctatatgaggatggtcatacactaataattaagaggcaatatgaatatgaaaatgctgcaattct 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||      ||||||||||    
T  29454080 actactacatggcaactcaattggtgccgttgcttccatatgaggatggtcatacactaataattaagaggcaatatgaacatg------ctgcaattct 29453987  T
Q  118 ctataactggagagataataaagtagagcgaacaaaaattattagagatagtatttatgattatgtatgttggtactcgaccatggactacactgaaagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29453986 ctataactggagagataataaagtagagcgaacaaaaattattagagatagtacttatgattatgtatgttggtactcgaccatggactacactgaaagc 29453887  T
Q  218 ttagtttcaattttatgaaagtaagttcctcctct 252  Q
    |||||||||||||||||||||||||||||||||||    
T  29453886 ttagtttcaattttatgaaagtaagttcctcctct 29453852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 29430793 - 29430717
Alignment:
Q  176 gattatgtatgttggtactcgaccatggactacactgaaagcttagtttcaattttatgaaagtaagttcctcctct 252  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  29430793 gattatatatgttggtactcgaccatggactacgccgaaagcttagtttcagttttatgaaagtaagttcctcctct 29430717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 29430950 - 29430901
Alignment:
Q  37 attggtgccgttgcttctatatgaggatggtcatacactaataattaaga 86  Q
    ||||||||| |||||||| || ||||||||||||||||||||| ||||||    
T  29430950 attggtgccattgcttctttacgaggatggtcatacactaatatttaaga 29430901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 29881572 - 29881609
Alignment:
Q  211 tgaaagcttagtttcaattttatgaaagtaagttcctc 248  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  29881572 tgaaagcttagtttcaattttttgaaagtaagttcctc 29881609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 29445392 - 29445356
Alignment:
Q  211 tgaaagcttagtttcaattttatgaaagtaagttcct 247  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29445392 tgaaagcttagtttcaattttttgaaagtaagttcct 29445356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 29476076 - 29476043
Alignment:
Q  211 tgaaagcttagtttcaattttatgaaagtaagtt 244  Q
    ||||||||||||||||||||| ||||||||||||    
T  29476076 tgaaagcttagtttcaattttttgaaagtaagtt 29476043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 29872029 - 29872066
Alignment:
Q  211 tgaaagcttagtttcaattttatgaaagtaagttcctc 248  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  29872029 tgaaagtttagtttcaattttttgaaagtaagttcctc 29872066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 29899671 - 29899712
Alignment:
Q  198 ccatggactacactgaaagcttagtttcaattttatgaaagt 239  Q
    ||||||| |||||||||||||||||||||||||  |||||||    
T  29899671 ccatggattacactgaaagcttagtttcaatttcttgaaagt 29899712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 19604336 - 19604288
Alignment:
Q  110 gcaattctctataactggagagataataaagtagagcgaacaaaaatta 158  Q
    |||||||||||||| | |||||||||||||||||||  ||||| |||||    
T  19604336 gcaattctctataatttgagagataataaagtagagacaacaagaatta 19604288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 29445514 - 29445470
Alignment:
Q  110 gcaattctctataactggagagataataaagtagagcgaacaaaa 154  Q
    |||||||||||||| |||||||| |||| || |||||||||||||    
T  29445514 gcaattctctataattggagagaaaatagagcagagcgaacaaaa 29445470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 29895645 - 29895677
Alignment:
Q  114 ttctctataactggagagataataaagtagagc 146  Q
    |||||||||| ||||||||||||||||||||||    
T  29895645 ttctctataattggagagataataaagtagagc 29895677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 29921759 - 29921723
Alignment:
Q  211 tgaaagcttagtttcaattttatgaaagtaagttcct 247  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  29921759 tgaaagcttagttccaattttttgaaagtaagttcct 29921723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 17560649 - 17560605
Alignment:
Q  110 gcaattctctataactggagagataataaagtagagcgaacaaaa 154  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||    
T  17560649 gcaattctctataactagagagataatacagtagggcgaacaaaa 17560605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 4366371 - 4366325
Alignment:
Q  110 gcaattctctataactggagagataataaagtagagcgaacaaaaat 156  Q
    |||||||||||||| | ||||||||| | ||||||||||||||||||    
T  4366371 gcaattctctataatttgagagataaaagagtagagcgaacaaaaat 4366325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 18913407 - 18913370
Alignment:
Q  109 tgcaattctctataactggagagataataaagtagagc 146  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  18913407 tgcaattctctataattggagagataataaagttgagc 18913370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University