View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_23 (Length: 261)
Name: NF6316_low_23
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_23 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 14924984 - 14925198
Alignment:
| Q |
29 |
gaggagcacagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtga |
128 |
Q |
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| T |
14924984 |
gaggaacacagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtga |
14925083 |
T |
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| Q |
129 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcc |
228 |
Q |
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| T |
14925084 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcc |
14925183 |
T |
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| Q |
229 |
tggaattgttgaagc |
243 |
Q |
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| T |
14925184 |
tggaattgttgaagc |
14925198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 12501 - 12715
Alignment:
| Q |
29 |
gaggagcacagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtga |
128 |
Q |
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| T |
12501 |
gaggaacaaagattcaccactcaatctaccatggatcttcaccattcttggtagtcactttataatactgcaagcgagacaatagaggtgaatcaggtga |
12600 |
T |
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| Q |
129 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcc |
228 |
Q |
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| T |
12601 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcc |
12700 |
T |
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| Q |
229 |
tggaattgttgaagc |
243 |
Q |
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| T |
12701 |
tggaattgttgaagc |
12715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 10421315 - 10421109
Alignment:
| Q |
36 |
acagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtgatggtgtt |
135 |
Q |
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| T |
10421315 |
acagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcag-tgatgatgtt |
10421217 |
T |
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| Q |
136 |
tttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcctggaatt |
235 |
Q |
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| T |
10421216 |
tttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcctggaatt |
10421117 |
T |
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| Q |
236 |
gttgaagc |
243 |
Q |
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| T |
10421116 |
gttgaagc |
10421109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 45500838 - 45501022
Alignment:
| Q |
29 |
gaggagcacagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtga |
128 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45500838 |
gaggaacacagattcaccactcaatctgccatggatcttcaccattcttggtagccactttataatactgcaaacgagataatagaggtgaatcaggtga |
45500937 |
T |
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| Q |
129 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttc |
213 |
Q |
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| T |
45500938 |
tggtgtttttgtgtttgttgtggagacatagatgtgggatcaaattctcaaaaatcaagttccagcatgtgccatcactctgttc |
45501022 |
T |
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