View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6316_low_24 (Length: 252)
Name: NF6316_low_24
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 28036154 - 28035932
Alignment:
| Q |
12 |
tagcaaaggtgctcatgaagattataagcttgttgctcacccaggtactaatcaaacatctaaccaaatgcataatgtcatctctaacacaatagccata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036154 |
tagcaaaggtgctcatgaagattataagcttgttgctcacccaggtactaatcaaacatctaaccaaatgcataatgtcatctctaacacaatagccata |
28036055 |
T |
|
| Q |
112 |
aagggaaataatagtaaggattctaaagaagataatgccaacgatgttgtaaagcacaacatcaacatcaacagccacagccacaataaccacaatgtat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036054 |
aagggaaataatagtaaggattctaaagaagataatgccaacgatgttgaaaagcacaacatcaacatcaacagccacagccacaataaccacaatgtat |
28035955 |
T |
|
| Q |
212 |
ctatagcggggacgagtatcaaa |
234 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28035954 |
ctatagcggggacgagtatcaaa |
28035932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University