View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_27 (Length: 247)
Name: NF6316_low_27
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 43099829 - 43099603
Alignment:
| Q |
1 |
cttcatccctacatactacatggacaagtcaatgaattagatttaaaatcctatgcacatgcaaaagtactgtttccttgatcaagttctttagtctaat |
100 |
Q |
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| T |
43099829 |
cttcatccctacatactacatggacaagtcaatgaattagatttaaaatcctatgcacatgcaaaa---ctgtttccttgatcaagttctttagtctaat |
43099733 |
T |
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| Q |
101 |
gctattaaaaaatgctataatatacatcaaatgtaaatattttgataggaactttgatttctttcaaatttcaagcaatcagttaaaactcaaaatatat |
200 |
Q |
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| T |
43099732 |
gctattaaaaaatgctataatatacatcaaatgtaaatattttgataggaacttagatttctttcaaatttcaagcaatcagttaaaactcaaaatatat |
43099633 |
T |
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| Q |
201 |
cgtacttttaccaacattcatagaattaac |
230 |
Q |
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| T |
43099632 |
cgtacttttaccaacattcatagaattaac |
43099603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 48446739 - 48446679
Alignment:
| Q |
150 |
aactttgatttctttcaaatttcaagcaatcagttaaaactcaaaatatatcgtactttta |
210 |
Q |
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| T |
48446739 |
aacttggatttctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagtttta |
48446679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 2849434 - 2849472
Alignment:
| Q |
122 |
atacatcaaatgtaaatattttgataggaactttgattt |
160 |
Q |
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| T |
2849434 |
atacatcaaatgttaatattttgataggaacttggattt |
2849472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 38489722 - 38489767
Alignment:
| Q |
156 |
gatttctttcaaatttcaagcaatcagttaaaactcaaaatatatc |
201 |
Q |
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| T |
38489722 |
gatttcattcaagtttcaagcaatcaattaaaactcaaaatatatc |
38489767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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