View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_28 (Length: 241)
Name: NF6316_low_28
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_28 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 47242213 - 47241991
Alignment:
| Q |
19 |
gtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatctatttgaattc |
118 |
Q |
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| T |
47242213 |
gtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatctatttgaattc |
47242114 |
T |
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| Q |
119 |
taaaaaacaataatatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaatgtttgggttacaagtcggctgaattggaagaa |
218 |
Q |
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| T |
47242113 |
taaaaaacaataatatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaatgtctgggttacaagtcggctgaattggaagaa |
47242014 |
T |
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| Q |
219 |
tgtgttatgattttacatgactt |
241 |
Q |
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| T |
47242013 |
tgtgttatgattttacatgactt |
47241991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 47248658 - 47248443
Alignment:
| Q |
19 |
gtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatctatttgaat-t |
117 |
Q |
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| T |
47248658 |
gtggctgcatcggttatatttcttgccagatttattatccggcctggagcacatccttgggtaaatacttgttgttatggacattgatttatttgattat |
47248559 |
T |
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| Q |
118 |
ctaaaaaacaataatatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaatgtttgggttacaagtcggctgaattggaaga |
217 |
Q |
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| T |
47248558 |
ctagag-----taatatttcaaagtacctaatgttcagaatctattgcagactccttccctgtgtgaatgcttgggttacacatcggctaatttagaaga |
47248464 |
T |
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| Q |
218 |
atgtgttatgattttacatga |
238 |
Q |
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| T |
47248463 |
ttgtgttatcattttacatga |
47248443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 47253473 - 47253396
Alignment:
| Q |
19 |
gtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttat |
96 |
Q |
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| T |
47253473 |
gtggctgcatctgttatatttcttgctagattcataatctgtcctggagtacatcctttggtaaatatttgatgttat |
47253396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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