View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_3 (Length: 512)
Name: NF6316_low_3
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_3 |
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| [»] scaffold0291 (1 HSPs) |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 11 - 496
Target Start/End: Complemental strand, 8416670 - 8416185
Alignment:
| Q |
11 |
cataggccggttcattctcgatggttcaatcttgagaaatacggttttggaatgatggaaggtgatagaagaaacgaggttaaattttcaagcaggattc |
110 |
Q |
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| T |
8416670 |
cataggccggttcattctcgatggttcaatcttgagaaatacggttttggaatgatggaaggtgatagaagaaacgaggttaaattttcaagcaggattc |
8416571 |
T |
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| Q |
111 |
acatgagaatttgcctcgaaggtggttaccatgtcttagatgaatcaactttgtatgcaagtgatcatagaccaacagctagacagctatggaagcagcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8416570 |
acatgagaatttgcctcgaaggtggttaccatgtcttagatgaatcaactttgtatgcaagtgatcatagaccaacagctagacagctatggaagcagcc |
8416471 |
T |
|
| Q |
211 |
tataggaatgcttgaagtagggatcttaggagcacaaaagcttcttccaatgaagatgaacaatagccgtggaagcaccgatgcgtactgcgtagccaag |
310 |
Q |
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| T |
8416470 |
tataggaatgcttgaagtagggatcttaggagcacaaaagcttcttccaatgaagatgaacaatagccgtggaagcaccgatgcgtactgcgtagccaag |
8416371 |
T |
|
| Q |
311 |
tatggtcagaaatggatcagaactagaactattcttgacacttttagtcctaaatggaatgaacaatacacatgggaagtttatgatccttgcactgtaa |
410 |
Q |
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| T |
8416370 |
tatggtcagaaatggatcagaactagaactattcttgacacttttagtcctaaatggaatgaacaatacacatgggaagtttatgatccttgcactgtaa |
8416271 |
T |
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| Q |
411 |
taacactaggagtttttgataattgccatttaggtggtggaggagaaaaagctcctagtggtggaagcaatgcagctagggattca |
496 |
Q |
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| T |
8416270 |
taacactaggagtttttgataattgccatttaggtggtggaggagaaaaagctcctagtggtggaagcaatgcagctagggattca |
8416185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 446
Target Start/End: Complemental strand, 7916211 - 7915782
Alignment:
| Q |
17 |
ccggttcattctcgatggttcaatcttgagaaatacggttttggaatgatggaaggtgatagaagaaacgaggttaaattttcaagcaggattcacatga |
116 |
Q |
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|||||||||||||| ||||| | |||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||| |||||||| | | |
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| T |
7916211 |
ccggttcattctcgttggtttagccttgagaaatttggttttggtgcacttgaaggtgatagaagaaatgagcagaaattttcaagtaggattcatctta |
7916112 |
T |
|
| Q |
117 |
gaatttgcctcgaaggtggttaccatgtcttagatgaatcaactttgtatgcaagtgatcatagaccaacagctagacagctatggaagcagcctatagg |
216 |
Q |
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|| ||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| || |
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| T |
7916111 |
gagtttgccttgaaggtggataccatgttttagatgaatccactttgtacattagtgatcaaagaccaacagcaagacagctatggaagcagcctattgg |
7916012 |
T |
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| Q |
217 |
aatgcttgaagtagggatcttaggagcacaaaagcttcttccaatgaagatgaacaatagccgtggaagcaccgatgcgtactgcgtagccaagtatggt |
316 |
Q |
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||| ||||| | || |||||||||||| || |||||| || ||||||||||| || | | ||| ||||| ||||| ||||| || || || |||||| |
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| T |
7916011 |
aatacttgagatgggcatcttaggagcaaaagggcttctccctatgaagatgaaggatggtcatggtagcacagatgcatactgtgttgctaaatatggt |
7915912 |
T |
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| Q |
317 |
cagaaatggatcagaactagaactattcttgacacttttagtcctaaatggaatgaacaatacacatgggaagtttatgatccttgcactgtaataacac |
416 |
Q |
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||||||||||||||||| ||||| || | |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7915911 |
cagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacac |
7915812 |
T |
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| Q |
417 |
taggagtttttgataattgccatttaggtg |
446 |
Q |
| |
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|||| |||||||| ||||| |||||||||| |
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| T |
7915811 |
taggtgtttttgacaattgtcatttaggtg |
7915782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 21197835 - 21197795
Alignment:
| Q |
365 |
tggaatgaacaatacacatgggaagtttatgatccttgcac |
405 |
Q |
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| T |
21197835 |
tggaatgagcaatatacttgggaagtttatgatccttgcac |
21197795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 27253677 - 27253637
Alignment:
| Q |
365 |
tggaatgaacaatacacatgggaagtttatgatccttgcac |
405 |
Q |
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| T |
27253677 |
tggaatgagcaatatacttgggaagtttatgatccttgcac |
27253637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 352 - 451
Target Start/End: Complemental strand, 3680 - 3581
Alignment:
| Q |
352 |
ttttagtcctaaatggaatgaacaatacacatgggaagtttatgatccttgcactgtaataacactaggagtttttgataattgccatttaggtggtgga |
451 |
Q |
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||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| || ||||| | || |||||||| ||||| ||||||||||||||| |
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| T |
3680 |
ttttaatccaaaatggaatgaacaatacacatgggaagttcatgatccttgcacagttataacttttggtgtttttgacaattgtcatttaggtggtgga |
3581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 13983 - 13913
Alignment:
| Q |
90 |
ttaaattttcaagcaggattcacatgagaatttgcctcgaaggtggttaccatgtcttagatgaatcaact |
160 |
Q |
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|||||||| |||| |||||||||||||| |||| || ||||||||||| ||||| || |||||||||||| |
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| T |
13983 |
ttaaatttgcaagtaggattcacatgagggtttgtctagaaggtggttatcatgttttggatgaatcaact |
13913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 9528986 - 9529027
Alignment:
| Q |
364 |
atggaatgaacaatacacatgggaagtttatgatccttgcac |
405 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
9528986 |
atggaatgagcaatacacatgggatgtttatgatccttgcac |
9529027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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