View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_30 (Length: 228)
Name: NF6316_low_30
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_30 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0112 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 15617379 - 15617159
Alignment:
| Q |
7 |
ggtttggtaagcaccccacgatacgttttatagatcaaattctttacttttggaggcactttcagtctctaaatatcataccaatatcccgatcgtcgaa |
106 |
Q |
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| T |
15617379 |
ggtttggtaagcaccc-acgatacgttttccagatcaaattctttacttttggaggcactttcagtctctaaatatcataccaatatctcgatcgttgaa |
15617281 |
T |
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| Q |
107 |
tgcgagaaacatataccaattcttccacacacaatatgtaagtacttttaacaaaatataaaccattcttcctggatttcaatattaacctatcatccac |
206 |
Q |
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| T |
15617280 |
tgcgagaaacatataccaattcttccacacacaatatgtaagtacttttaacagaatataaaccattcttctcggatttcaatattaacctatcatccac |
15617181 |
T |
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| Q |
207 |
cacctgatcgagtaacaatgtt |
228 |
Q |
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| T |
15617180 |
cacctgatcgagtaacaatgtt |
15617159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 43219005 - 43219187
Alignment:
| Q |
40 |
atcaaattctttacttttggaggcactttcagtctctaaatatcataccaatatcccgatcgtcgaatgcgagaaacatataccaattcttccacacaca |
139 |
Q |
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| T |
43219005 |
atcaaattctttactttaggcggaactttcagtctccaaataacagaccaaaatcctggtcttcgaaggtgagaaacatctaccaattcttccacacaca |
43219104 |
T |
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| Q |
140 |
atatgtaagtacttttaacaaaatataaaccattcttcctggatttcaatattaacctatcatccaccacctgatcgagtaac |
222 |
Q |
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| T |
43219105 |
atctgtaagcaatcttgacggaatataaaccatttttctcagctttccagattaatctgtcatccaccacctgatcaagtaac |
43219187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 26131013 - 26130880
Alignment:
| Q |
40 |
atcaaattctttacttttggaggcactttcagtctctaaatatcataccaatatcccgatcgtcgaatgcgagaaacatataccaattcttccacacaca |
139 |
Q |
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| T |
26131013 |
atcaaattctttactttttgcggaactttcaatctccaaataacagatcaaaatcctggccttcgaaggtgagaaacatctatcaattcttccacacaca |
26130914 |
T |
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| Q |
140 |
atatgtaagtacttttaacaaaatataaaccatt |
173 |
Q |
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| T |
26130913 |
atctataagcactcttgacggaatataaaccatt |
26130880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 228
Target Start/End: Complemental strand, 33711 - 33526
Alignment:
| Q |
43 |
aaattctttacttttggaggcactttcagtctctaaatatcataccaatatcccgatcgtcgaatgcgagaaacatataccaattcttccacacacaata |
142 |
Q |
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| T |
33711 |
aaattctttattttcggcagcactttcagtgtccaaataccagaccaatatccccgcctccgaaggtgagaaacagccaccaattcttccatagacaatc |
33612 |
T |
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| Q |
143 |
tgtaagtacttttaacaaaatataaaccattcttcctggatttcaatattaacctatcatccaccacctgatcgagtaacaatgtt |
228 |
Q |
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| T |
33611 |
tttaagcactcttgaaggaatataaaccattcttctcagctttccatattaacctatcatccaccacctgatcaagtaacgatgtt |
33526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 20247375 - 20247274
Alignment:
| Q |
40 |
atcaaattctttacttttggaggcactttcagtctctaaatatcataccaatatcccgatcgtcgaatgcgagaaacatataccaattcttccacacaca |
139 |
Q |
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||||||||||||||||| || || |||||||||||| ||||| || ||||| |||| | || ||||| | ||||||||| ||| |||||||||||||||| |
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| T |
20247375 |
atcaaattctttactttaggtggaactttcagtctccaaataacagaccaaaatcctggtcttcgaaggtgagaaacatctactaattcttccacacaca |
20247276 |
T |
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| Q |
140 |
at |
141 |
Q |
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|| |
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| T |
20247275 |
at |
20247274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 17349 - 17467
Alignment:
| Q |
110 |
gagaaacatataccaattcttccacacacaatatgtaagtacttttaacaaaatataaaccattcttcctggatttcaatattaacctatcatccaccac |
209 |
Q |
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| T |
17349 |
gagaaacatccaccaattcttccatagacaatctttaagcactcttgaaggaatataaaccattattctcagctttccatattaacctatcatccaccac |
17448 |
T |
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| Q |
210 |
ctgatcgagtaacaatgtt |
228 |
Q |
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|||||| |||||| ||||| |
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| T |
17449 |
ctgatcaagtaacgatgtt |
17467 |
T |
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