View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_4 (Length: 498)
Name: NF6316_low_4
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 173 - 468
Target Start/End: Original strand, 54573461 - 54573746
Alignment:
| Q |
173 |
gatagtgtgtgaaattctggtatttttagtttctatgcataagagaatatgtttcatctctcaacagtcacatatctcaccattttactattcaaattat |
272 |
Q |
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| T |
54573461 |
gatagtgtgtgaaattctgatatttttagtgtctatgcataagagaatatgtttcatctctcaacagtcacatatctcaccattttactattcaaattat |
54573560 |
T |
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| Q |
273 |
tttaccctaactatttatgcttcatttgagaatatagatagaattaaattcacttttgctacaaattcatattctcattcannnnnnnnnnnnnnnnnnn |
372 |
Q |
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| T |
54573561 |
tttaccctaactatttatgcttcatttgagaatatagatagaattaaattcactttcgctacaaattcatattctcattca----------ttttttttt |
54573650 |
T |
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| Q |
373 |
ncagaattggagaaggaaactggaaatcaattcttcgttcttatgattttgacgaaagaactgaagtaagtctagttaaaaggtattggtattttg |
468 |
Q |
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| T |
54573651 |
tcagaattggagaaggaaactggaaatcaattcttcgttcttatgattttgacgaaagaactgaagtaagtctagttaaaaggtattggtattttg |
54573746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 173 - 467
Target Start/End: Original strand, 55156740 - 55157030
Alignment:
| Q |
173 |
gatagtgtgtgaaattctggtatttttagtttctatgcataagagaatatgtttcatctctcaacagtcacatatctcaccattttactattcaaattat |
272 |
Q |
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| T |
55156740 |
gatagtgtgtgaaattctggtatttttagtttctatgcataagagaatatgtttcatctctcaacagtcacatatctcaccattttatcattcaaattat |
55156839 |
T |
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| Q |
273 |
tttaccctaactatttatgcttcatttgagaat---atagatagaattaaattcacttttgctacaaattcatattctcattcannnnnnnnnnnnnnnn |
369 |
Q |
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| T |
55156840 |
tttatcccaactatttttgcttcatttgagaatataataaatagaattaaattcactttcactacaaattcatattctcatttatctttctttttttt-- |
55156937 |
T |
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| Q |
370 |
nnnncagaattggagaaggaaactggaaatcaattcttcgttcttatgattttgacgaaagaactgaagtaagtctagttaaaaggtattggtatttt |
467 |
Q |
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| T |
55156938 |
-----agaattggagaaggaaactggaaatcaattcttcgttcttatgcatttgacgaaagaactgaagtaagtctagttaaaaggtattggtttttt |
55157030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 55156585 - 55156653
Alignment:
| Q |
18 |
aaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcattgatacaat |
86 |
Q |
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| T |
55156585 |
aaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcattgatacaat |
55156653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 54573322 - 54573386
Alignment:
| Q |
22 |
tgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcattgatacaat |
86 |
Q |
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| T |
54573322 |
tgtatgtacttgttttaaccaatcaagttactataatattttgttgtgtatttcattgatacaat |
54573386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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