View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_7 (Length: 475)
Name: NF6316_low_7
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 45728950 - 45728486
Alignment:
| Q |
1 |
aatgcttgtgtttcttaggataattatactaatatgataatgaagtttcatctgaaagtttaaacaatttgtaataaggaatacagttaatgcaatcaaa |
100 |
Q |
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| T |
45728950 |
aatgcttgtgtttcttaggataattatactaatatgataatgaagtttcatctgaaattttaaacaatttgtaataaggaatacagttgatgcaatcaaa |
45728851 |
T |
|
| Q |
101 |
tata--agaatccgaaatttcaaatatgcttgcttccttttcgcattgtaaccaaaaagaaaata-tgcttgcttcgactttgatcagtagaaataattg |
197 |
Q |
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| T |
45728850 |
tatataagaatctgaaatttcaaatatgcttgcttcctttttgcattgtaaccaaaaaaaaaaaaatgcttgcttcgactttgatcagtagaaataattg |
45728751 |
T |
|
| Q |
198 |
gagttccgtgtggataatgtgggtggattcccatattga-tggttgaaggaaatggccgtctgttatccagtcgtttagtgaagctcaaggctcaagcaa |
296 |
Q |
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| T |
45728750 |
gagttccgtgtggataatgtgggtggattcccatattgaatggttgaaggaaatggccgtctgttatccagtcgtttagtgaagctcaaggctcaagcaa |
45728651 |
T |
|
| Q |
297 |
gcaacatcggctgacccacaagacgacccacgttcaacattctcattcttattcttttttgaatgtgatggtgaagatctcttccggcttaaatactaga |
396 |
Q |
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| T |
45728650 |
gcaacatcggctgacccacaagacgacccacgttcaacattctcattcttattcttttttgaatgtgatggtgaagatctcttccggcttaaatactgga |
45728551 |
T |
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| Q |
397 |
g-ttcttaatttgaattcactcataagtatcaagtatgtgtatgtagcaggtaagggagagttttg |
461 |
Q |
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| T |
45728550 |
gattcttaatttgaattcactcataagcat-aagtatgtgtatgtagcaggtaagggagagttttg |
45728486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 227 - 356
Target Start/End: Complemental strand, 45735028 - 45734894
Alignment:
| Q |
227 |
cccatattga-tggttgaaggaaatggccgtctgttatccagtcgtttag-------tgaagctcaaggctcaagcaagcaacatcggctgacccacaag |
318 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||| |||||||||| || |
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| T |
45735028 |
cccatattgaatggtggaaggaaatggccgtctgttatccagtcatttagactttagtgaagctcaag---caagcaagtaacatcagctgacccacgag |
45734932 |
T |
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| Q |
319 |
acgacccacgttcaacattctcattcttattctttttt |
356 |
Q |
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| T |
45734931 |
acgacacaacttcaacattcttattcttattctttttt |
45734894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 45735108 - 45735044
Alignment:
| Q |
66 |
aatttgtaataaggaatacagttaatgcaatcaaatataagaatccgaaatttcaaatatgcttg |
130 |
Q |
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||||||||||||| ||||||| |||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
45735108 |
aatttgtaataagaaatacagctaatacaatcaaatataagaatctaaaattttaaatatgcttg |
45735044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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