View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_8 (Length: 464)
Name: NF6316_low_8
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 26693 - 27139
Alignment:
| Q |
1 |
ctttccacattcagtaaactacatgatacttttgagcctgcggtatcttgaactgaattttgaagaatcaatttgcnnnnnnnctgaaaacaaactgaag |
100 |
Q |
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| T |
26693 |
ctttccacattcagtaaactacatgatacttttgagcctgcagtatcttgaactgaattttgaagaatcaatttgctttttttctgaaaacaaactgaag |
26792 |
T |
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| Q |
101 |
aattgcattcaacaaggtaaacatagtgcataatataaataattagctattaggtatacgatgtaactaagaaacttcagttaactgctnnnnnnnctca |
200 |
Q |
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| T |
26793 |
aattgcattcaacaaagtaaacatagtgcataatataaataattagctattagttatacgatgtaactaagaaacttcagttaactgctaaaaaaactca |
26892 |
T |
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| Q |
201 |
agcataaactaaatttgatcttaattggtgtctaaggtagatatatgtataaccactccctaaatgcatgtctccatagtacagagatcagtttagccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26893 |
agcataaactaaatttgatcttaattggtgtctaaggtagatatatgtataaccactccctaaatgcatgtctccatagtacagagatcagtttagccat |
26992 |
T |
|
| Q |
301 |
tggggttttttcttttgtaatatgattatatgaatttgaataaaacaatgaacagtgttgtgtctaatcaatcgatttaaacatctagggtaccaatata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26993 |
tggggttttttcttttgtaatatgattatatgaatttgaataaaacaatgaacagtgttgtgtctaatcaatcgatttaaacatctagggtaccaatata |
27092 |
T |
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| Q |
401 |
tgtcacatcgaaatgaaagcaatgttaccaagtaagacgcagtgtgt |
447 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27093 |
tgtcacatagaaatgaaagcaatgttaccaagtaagacgcagtgtgt |
27139 |
T |
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