View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6316_low_9 (Length: 424)

Name: NF6316_low_9
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6316_low_9
NF6316_low_9
[»] chr3 (10 HSPs)
chr3 (1-415)||(23017401-23017815)
chr3 (92-218)||(23033194-23033320)
chr3 (318-415)||(23036509-23036606)
chr3 (329-415)||(23140385-23140471)
chr3 (318-415)||(23039380-23039477)
chr3 (329-415)||(23024611-23024697)
chr3 (318-412)||(23146262-23146356)
chr3 (318-400)||(23033053-23033135)
chr3 (329-415)||(23149097-23149183)
chr3 (156-216)||(50552920-50552980)
[»] chr6 (2 HSPs)
chr6 (321-415)||(21780152-21780246)
chr6 (117-193)||(32863449-32863525)
[»] scaffold0554 (1 HSPs)
scaffold0554 (318-415)||(6318-6415)
[»] chr8 (2 HSPs)
chr8 (134-216)||(41317780-41317862)
chr8 (116-200)||(43124224-43124307)
[»] chr7 (1 HSPs)
chr7 (161-216)||(37697521-37697576)
[»] chr4 (1 HSPs)
chr4 (127-216)||(34207849-34207938)
[»] chr5 (1 HSPs)
chr5 (117-165)||(43537591-43537639)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 23017815 - 23017401
Alignment:
Q  1 tgaagctgtgaaatattttcttcgtgatttgtatattatattatgcagtaatggatgctatgtacgacttgtcctttgaagtagtctccatttactttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23017815 tgaagctgtgaaatattttcttcgtgatttgtatattatattatgcagtaatggatgctatgtacgacttgtcctttgaagtagtgtccatttactttcc 23017716  T
Q  101 atgtatcatgtttttgtaaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaat 200  Q
    ||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  23017715 atgttccatgtttttgtatacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcaacatttgaagaaat 23017616  T
Q  201 atcgaaaatgtcaaaatacaggtttatttatttatgaaaatatagcattatatgaatcttctccctatcactactacacaaatatctccttaaacatcct 300  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||    
T  23017615 atggaaaacgtcaaaatacaggtttatttatttatgaaaatatagcattatatgaatcttctccctatcactactacagaaatatctctttaaatatcct 23017516  T
Q  301 tcgattagcttgacctaatagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataag 400  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23017515 tcgattagcttgacctaatagctacttttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataag 23017416  T
Q  401 gaatccaagaataat 415  Q
    |||||||||||||||    
T  23017415 gaatccaagaataat 23017401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 23033320 - 23033194
Alignment:
Q  92 ttactttccatgtatcatgtttttgtaaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcatt 191  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||| ||| ||||| ||||||| ||||    
T  23033320 ttactttccatgtttcatgtttttgtaaacatcatagaatatagattcagtgtttctctcaccattttcttttacaagttttaaaaacagattcaacatt 23033221  T
Q  192 ttaagaaatatcgaaaatgtcaaaata 218  Q
    || |||||| | ||||| || ||||||    
T  23033220 tttagaaattttgaaaacgttaaaata 23033194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 318 - 415
Target Start/End: Complemental strand, 23036606 - 23036509
Alignment:
Q  318 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 415  Q
    |||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  23036606 atagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 23036509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 329 - 415
Target Start/End: Complemental strand, 23140471 - 23140385
Alignment:
Q  329 tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 415  Q
    |||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  23140471 tcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataat 23140385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 318 - 415
Target Start/End: Complemental strand, 23039477 - 23039380
Alignment:
Q  318 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 415  Q
    |||||||||| ||||||| |||| | || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  23039477 atagctacttttcaggacgtttttggtgctggaggtgagacatcagcaagcaccatagactgggcaatggtagaaatgataagggatccaagaataat 23039380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 329 - 415
Target Start/End: Complemental strand, 23024697 - 23024611
Alignment:
Q  329 tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 415  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||||||    
T  23024697 tcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaataat 23024611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 318 - 412
Target Start/End: Complemental strand, 23146356 - 23146262
Alignment:
Q  318 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaat 412  Q
    ||||||||||  ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||    
T  23146356 atagctactttacaggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaaggatccaagaat 23146262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 400
Target Start/End: Complemental strand, 23033135 - 23033053
Alignment:
Q  318 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataag 400  Q
    |||||||||| |||||||||||| | || |||||| ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  23033135 atagctacttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatgataag 23033053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 329 - 415
Target Start/End: Complemental strand, 23149183 - 23149097
Alignment:
Q  329 tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 415  Q
    |||||||||||| | || |||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||||    
T  23149183 tcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaataat 23149097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 50552920 - 50552980
Alignment:
Q  156 tttccttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 216  Q
    |||||||||||||||||  |||| ||||  ||||||||||||||| | |||||||||||||    
T  50552920 tttccttttacaatttttgaaaatagatctagcattttaagaaattttgaaaatgtcaaaa 50552980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 321 - 415
Target Start/End: Complemental strand, 21780246 - 21780152
Alignment:
Q  321 gctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 415  Q
    ||||||| ||||||||| || | || |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  21780246 gctacttttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaataat 21780152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 32863449 - 32863525
Alignment:
Q  117 taaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcatttt 193  Q
    |||||||  |||||||||||||||||| |  |||||||||||||||||||| || | ||||| ||||||| ||||||    
T  32863449 taaacatgatagaatatagattcaatactcttctcaccatttccttttacagttgttaaaaacagattcaacatttt 32863525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 415
Target Start/End: Original strand, 6318 - 6415
Alignment:
Q  318 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 415  Q
    |||||||||| | |||||||||| | || ||||||||| |||||||||| |||||||||||||||||||  ||||||||||||| | |||||||||||    
T  6318 atagctactttttaggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaataat 6415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 41317780 - 41317862
Alignment:
Q  134 agattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 216  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||| | ||  |||| ||||| |||||| |||||||||||||    
T  41317780 agatccaatatttctctcaccattttcttttacaattttcaaaaacaaatcaagcaatttaaaaaatattgaaaatgtcaaaa 41317862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 43124224 - 43124307
Alignment:
Q  116 gtaaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaat 200  Q
    ||||||||  ||||||||| || ||||||||||||  ||||||| |||||||||||| | ||| ||||| |||||||| ||||||    
T  43124224 gtaaacataatagaatatatatccaatatttctctttccatttc-ttttacaatttttataaacagatttagcattttcagaaat 43124307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 37697576 - 37697521
Alignment:
Q  161 ttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 216  Q
    ||||||||||||  |||| |||||||||| |||||||||| | |||||||||||||    
T  37697576 ttttacaattttttaaaatagattcagcagtttaagaaattttgaaaatgtcaaaa 37697521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 34207849 - 34207938
Alignment:
Q  127 agaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 216  Q
    ||||||||||| ||||||||| |||| |||||  ||||||||| ||  |||| ||||  || ||||| |||||||| ||||||| |||||    
T  34207849 agaatatagatccaatatttccctcagcattttattttacaatatttgaaaatagatctagaatttttagaaatattgaaaatgccaaaa 34207938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 43537591 - 43537639
Alignment:
Q  117 taaacatcgtagaatatagattcaatatttctctcaccatttcctttta 165  Q
    ||||||| | |||||||||||| ||||||| ||||||||||| ||||||    
T  43537591 taaacataggagaatatagatttaatatttttctcaccattttctttta 43537639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University