View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6317_high_2 (Length: 437)

Name: NF6317_high_2
Description: NF6317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6317_high_2
NF6317_high_2
[»] chr4 (17 HSPs)
chr4 (13-405)||(22575066-22575458)
chr4 (320-384)||(32922825-32922889)
chr4 (323-391)||(33335280-33335348)
chr4 (314-349)||(27359540-27359575)
chr4 (317-391)||(43154575-43154649)
chr4 (314-407)||(45219021-45219115)
chr4 (314-382)||(34236750-34236818)
chr4 (314-384)||(10097944-10098014)
chr4 (321-370)||(31377585-31377633)
chr4 (314-363)||(39985078-39985127)
chr4 (321-358)||(43771870-43771907)
chr4 (314-391)||(50783560-50783637)
chr4 (315-383)||(12596531-12596599)
chr4 (323-371)||(21823105-21823153)
chr4 (314-374)||(32141384-32141444)
chr4 (338-382)||(34929512-34929556)
chr4 (323-371)||(45670462-45670510)
[»] chr3 (19 HSPs)
chr3 (315-386)||(50888867-50888938)
chr3 (314-391)||(9247106-9247183)
chr3 (318-391)||(15664487-15664560)
chr3 (326-392)||(23629273-23629339)
chr3 (318-391)||(15568508-15568581)
chr3 (261-391)||(48650325-48650452)
chr3 (318-384)||(4541331-4541397)
chr3 (321-387)||(53199778-53199844)
chr3 (314-391)||(40241995-40242072)
chr3 (264-366)||(7753108-7753207)
chr3 (314-370)||(52525478-52525534)
chr3 (314-369)||(7613193-7613248)
chr3 (314-381)||(23631312-23631379)
chr3 (340-391)||(30403239-30403290)
chr3 (326-374)||(5047747-5047796)
chr3 (26-83)||(26507193-26507250)
chr3 (321-358)||(27213986-27214023)
chr3 (338-391)||(34908575-34908628)
chr3 (321-361)||(29373172-29373212)
[»] chr7 (14 HSPs)
chr7 (314-391)||(28147476-28147554)
chr7 (314-413)||(1397845-1397945)
chr7 (314-380)||(30965766-30965832)
chr7 (317-371)||(33878195-33878249)
chr7 (317-371)||(42161540-42161594)
chr7 (314-387)||(23803380-23803453)
chr7 (321-413)||(27219875-27219967)
chr7 (316-406)||(29648541-29648632)
chr7 (349-384)||(34533076-34533111)
chr7 (316-363)||(42646432-42646479)
chr7 (317-363)||(35316477-35316523)
chr7 (321-390)||(29414664-29414733)
chr7 (314-379)||(42753269-42753334)
chr7 (339-391)||(40332892-40332944)
[»] chr1 (16 HSPs)
chr1 (315-379)||(32815199-32815263)
chr1 (326-384)||(11453378-11453436)
chr1 (315-369)||(10553829-10553883)
chr1 (314-384)||(12047239-12047308)
chr1 (314-384)||(36901606-36901676)
chr1 (321-386)||(33135109-33135174)
chr1 (323-374)||(1035204-1035255)
chr1 (313-384)||(41834786-41834857)
chr1 (338-383)||(32784839-32784884)
chr1 (333-384)||(5807400-5807452)
chr1 (321-413)||(38902164-38902256)
chr1 (326-370)||(40287571-40287615)
chr1 (321-383)||(17922316-17922378)
chr1 (321-378)||(11818191-11818248)
chr1 (315-380)||(41619254-41619319)
chr1 (325-413)||(50564213-50564301)
[»] chr5 (13 HSPs)
chr5 (314-409)||(29045330-29045426)
chr5 (317-383)||(13138528-13138594)
chr5 (315-388)||(5264423-5264496)
chr5 (314-390)||(39351043-39351119)
chr5 (324-384)||(3135624-3135684)
chr5 (317-380)||(1299936-1299999)
chr5 (321-391)||(27674802-27674872)
chr5 (336-413)||(42430468-42430546)
chr5 (338-414)||(2054068-2054145)
chr5 (314-353)||(35556444-35556483)
chr5 (314-387)||(14640971-14641042)
chr5 (326-380)||(16054400-16054453)
chr5 (346-409)||(6633025-6633089)
[»] chr8 (11 HSPs)
chr8 (314-389)||(2072187-2072262)
chr8 (321-391)||(13177772-13177842)
chr8 (336-392)||(34505216-34505272)
chr8 (324-373)||(32094373-32094422)
chr8 (314-387)||(41909205-41909278)
chr8 (314-372)||(1090048-1090104)
chr8 (321-391)||(7621502-7621572)
chr8 (326-371)||(10921722-10921767)
chr8 (326-391)||(24186013-24186077)
chr8 (321-389)||(515139-515207)
chr8 (314-358)||(32967726-32967770)
[»] chr2 (14 HSPs)
chr2 (314-391)||(14812292-14812369)
chr2 (321-386)||(7920223-7920288)
chr2 (314-358)||(12956884-12956928)
chr2 (317-389)||(28489143-28489215)
chr2 (322-378)||(37199982-37200038)
chr2 (318-385)||(7670182-7670249)
chr2 (344-391)||(28538031-28538078)
chr2 (314-414)||(31608186-31608286)
chr2 (317-380)||(18375493-18375556)
chr2 (314-384)||(13490864-13490934)
chr2 (344-390)||(37528727-37528773)
chr2 (321-409)||(1758457-1758546)
chr2 (314-391)||(37331809-37331886)
chr2 (310-382)||(10727076-10727147)
[»] scaffold0223 (1 HSPs)
scaffold0223 (317-411)||(22132-22227)
[»] chr6 (4 HSPs)
chr6 (321-413)||(7984599-7984692)
chr6 (314-358)||(40070-40114)
chr6 (322-384)||(4057384-4057446)
chr6 (316-391)||(25211671-25211746)
[»] scaffold0172 (1 HSPs)
scaffold0172 (314-381)||(19457-19524)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 22575066 - 22575458
Alignment:
Q  13 aatatgcgtgagaatatgtattaccctattgatcctctacttatttactggcttgattctctgccaaatttatagcatgaagttgtactagtacctatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||    
T  22575066 aatatgcgtgagaatatgtattaccctattgatcctctacttatttactggcttgattctctgccaaatttgtagcataaagttgtactaatacctatat 22575165  T
Q  113 aaagaaacttgttaagtagtaatactttgtaggttggatggacggggtgtccacctatcttttctcaatccaaaaccaaaactaaaaccaaaatannnnn 212  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  22575166 aaaaaaacttgttaagtaataatactttgtaggttggatggacggggtgtccacctatcttttctcaatccaaaaccaaaactaaaaccaaaatattttt 22575265  T
Q  213 nnataataaatgtgtatgaacgtgtttcttgatatgtaannnnnnnngtcttgctaacaagtgtgttaagggtaatatttaacgaacccattacgagaaa 312  Q
      |||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||| |||||||||||||||||||  ||||||||    
T  22575266 ttataataaatgtgtatgaacgtgtttcttgatatgtaattttttttgtcttgctaacaagtgtgctaagagtaatatttaacgaacccacaacgagaaa 22575365  T
Q  313 taattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactttatatggttaaacaa 405  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22575366 taattttatcttaaaaatacaagtcaaacacatgtaaaagtcataattacataattttcaatataaaaattattactttatatggttaaacaa 22575458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 32922825 - 32922889
Alignment:
Q  320 atcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    ||||| |||||| |||||||| |||||||||||| |||| || |||||||| |||||||||||||    
T  32922825 atctttaaaatataaatcaaatacatgtaaaagtgataactatataattttcaatataaaaatta 32922889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 33335280 - 33335348
Alignment:
Q  323 ttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    |||||||||||| ||||| |||||||||  |||||| |||| |||||| ||||||||||||| ||||||    
T  33335280 ttaaaaatacaagtcaaatacatgtaaatatcataactacacaattttcaatataaaaattactacttt 33335348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 27359540 - 27359575
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaa 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  27359540 aattttatcttaaaaatacaaatcaaacacatgtaa 27359575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 43154649 - 43154575
Alignment:
Q  317 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||| |||||| || || ||| |||||||||||||| |||| || | ||||| |||||||||||||||||||||    
T  43154649 tttattttaaaagtagaagtcagacacatgtaaaagtaataaatatacaatttctaatataaaaattattacttt 43154575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 407
Target Start/End: Original strand, 45219021 - 45219115
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatg 407  Q
    |||||| |||| |||||| || | ||||| ||||||||||||||| |||| |||||  ||||||||||||| ||| |||| ||| ||||||||||    
T  45219021 aattttgtctttaaaatataagtaaaacatatgtaaaagtcataagtacacaatttcaaatataaaaattactacttttagatgcttaaacaatg 45219115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 34236750 - 34236818
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaat 382  Q
    |||||| |||||||||||||| ||||| |||||||||| |||||| |||| |||||  ||| |||||||    
T  34236750 aattttgtcttaaaaatacaattcaaaaacatgtaaaaatcataactacacaatttgcaatgtaaaaat 34236818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 10098014 - 10097944
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    |||||| |||| |||||| ||  |||| ||||||||||||||||| || | |||||| |||||||||||||    
T  10098014 aattttgtcttgaaaatataaggcaaatacatgtaaaagtcataactatacaattttcaatataaaaatta 10097944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 31377585 - 31377633
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttt 370  Q
    |||| ||||||||| |||||||||||| ||||||||||||||| ||||||    
T  31377585 tcttgaaaatacaagtcaaacacatgt-aaagtcataattacacaatttt 31377633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 39985127 - 39985078
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattaca 363  Q
    |||||||||||||||  | |||||||| |||||||||||| |||||||||    
T  39985127 aattttatcttaaaagcataaatcaaatacatgtaaaagtaataattaca 39985078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 43771870 - 43771907
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataa 358  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  43771870 tcttaaaaatacaagtcaaacacatgttaaagtcataa 43771907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 50783637 - 50783560
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||||||||| |||| |  | |||||||||||||||||| ||||||||| || |||  |||||||| ||| ||||||    
T  50783637 aattttatcttgaaaacattagtcaaacacatgtaaaagtaataattacacaagtttctatataaaagttactacttt 50783560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 12596599 - 12596531
Alignment:
Q  315 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatt 383  Q
    ||||| |||||||||||||||||||| | | ||||||| ||||| || |||||||| ||| | ||||||    
T  12596599 attttgtcttaaaaatacaaatcaaataaacgtaaaagacataaatatataattttcaatgtcaaaatt 12596531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 21823105 - 21823153
Alignment:
Q  323 ttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttt 371  Q
    |||||| ||||| |||||||||||||||| ||||||| | |||||||||    
T  21823105 ttaaaactacaagtcaaacacatgtaaaaatcataataatataattttt 21823153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 32141384 - 32141444
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaat 374  Q
    ||||||||||| ||||||||| |||||||||| ||||| ||| || || | ||||||||||    
T  32141384 aattttatcttgaaaatacaagtcaaacacatctaaaaatcacaactatacaatttttaat 32141444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 34929512 - 34929556
Alignment:
Q  338 aaacacatgtaaaagtcataattacataatttttaatataaaaat 382  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||    
T  34929512 aaacacatataaaagtcataaatacacaattttcaatataaaaat 34929556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 45670462 - 45670510
Alignment:
Q  323 ttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttt 371  Q
    |||||||||||||||||||||   |||||||  ||||||||||||||||    
T  45670462 ttaaaaatacaaatcaaacacgcataaaagttgtaattacataattttt 45670510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 386
Target Start/End: Original strand, 50888867 - 50888938
Alignment:
Q  315 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatt 386  Q
    ||||||||||| |||||||| |||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  50888867 attttatcttagaaatacaagtcaaacacatgtaaaagttataactacacaatttttaatataaaaattatt 50888938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 9247183 - 9247106
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||||||||| ||||||||||| ||||||   |||||||||||| |||||||||||| |||||||||||| ||||||    
T  9247183 aattttatcttgaaaatacaaatgaaacacgcataaaagtcataactacataattttttatataaaaattactacttt 9247106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 15664487 - 15664560
Alignment:
Q  318 ttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||||||||||||||| | |||||||||||||| |||||| || |||| ||||||||||||| ||||||||||    
T  15664487 ttatcttaaaaatacaagttaaacacatgtaaaaatcataactatataacttttaatataaaagttattacttt 15664560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 23629339 - 23629273
Alignment:
Q  326 aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttta 392  Q
    |||||||||||||||||||||||||||||||||||| | |||||| ||| ||||| ||| |||||||    
T  23629339 aaaatacaaatcaaacacatgtaaaagtcataattatacaattttcaatgtaaaagttactacttta 23629273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 15568508 - 15568581
Alignment:
Q  318 ttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||||||||||| ||| |||||||||| |||||  ||||| || | |||||||||||||||| ||||||||||    
T  15568508 ttatcttaaaaatgcaagtcaaacacatataaaaagcataactatacaatttttaatataaaagttattacttt 15568581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 391
Target Start/End: Complemental strand, 48650452 - 48650325
Alignment:
Q  261 tcttgctaacaagtgtgttaagggtaatatttaacgaacccattacgagaaataattttatcttaaaaatacaaatcaaacacatgtaaaagtcataatt 360  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  || | ||||||  ||||| || |||||||||||   ||||||| |||||||| |||| |    
T  48650452 tcttgctaacaagtgtcttaaatgtattatttaaggaacttat-atgagaaa--attttgtcctaaaaatacaagataaacacaggtaaaagttataact 48650356  T
Q  361 acataatttttaatataaaaattattacttt 391  Q
    ||| |||||||||||||||| ||| ||||||    
T  48650355 acacaatttttaatataaaagttactacttt 48650325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 4541397 - 4541331
Alignment:
Q  318 ttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    ||||||| ||||||||| ||||| | |||||||||| ||||||||| |||| | |||||||||||||    
T  4541397 ttatcttgaaaatacaagtcaaagatatgtaaaagttataattacaaaattctcaatataaaaatta 4541331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 53199844 - 53199778
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatta 387  Q
    ||||||||||| ||||||||||||||| |||||||||| || | |||||| ||| ||||| ||||||    
T  53199844 tcttaaaaataaaaatcaaacacatgttaaagtcataactaaacaattttcaatgtaaaagttatta 53199778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 40242072 - 40241995
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||| ||||||||||||||| | || |||||||||||| ||||| |||| ||||||  || ||||||||| ||||||    
T  40242072 aatttcatcttaaaaatacaagttaagcacatgtaaaaggcataactacacaattttccatgtaaaaattactacttt 40241995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 366
Target Start/End: Complemental strand, 7753207 - 7753108
Alignment:
Q  264 tgctaacaagtgtgttaagggtaatatttaacgaacccattacgagaaataattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattaca 363  Q
    ||||||||||||| ||||||||| | ||||| ||| ||| ||    ||| | ||||||||| |||| | ||||||||||||| ||||||| |||||||||    
T  7753207 tgctaacaagtgtcttaagggtattgtttaaggaatccaataa---aaaaagttttatcttgaaaacataaatcaaacacatataaaagtaataattaca 7753111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 52525534 - 52525478
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttt 370  Q
    |||||| | ||||||||| || ||||| |||||||||||||||||||| ||||||||    
T  52525534 aattttgttttaaaaatataagtcaaatacatgtaaaagtcataattatataatttt 52525478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 7613193 - 7613248
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattt 369  Q
    |||||| ||||||||||| || |||| || |||||||| |||||||||||||||||    
T  7613193 aattttgtcttaaaaatataagtcaatcatatgtaaaaatcataattacataattt 7613248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 23631312 - 23631379
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaa 381  Q
    ||||||||||| ||||||||| | |||||| |||||||||||||| |||| ||| ||| || ||||||    
T  23631312 aattttatcttgaaaatacaagttaaacacgtgtaaaagtcataactacaaaatctttcatgtaaaaa 23631379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 30403290 - 30403239
Alignment:
Q  340 acacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    |||||||||||||||||||||| | ||||| |||| ||||| ||||||||||    
T  30403290 acacatgtaaaagtcataattatacaatttctaatgtaaaagttattacttt 30403239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 5047747 - 5047796
Alignment:
Q  326 aaaatacaaatcaaacacatgt-aaaagtcataattacataatttttaat 374  Q
    |||||| ||||||||||||||| ||||||||||| |||| ||||||||||    
T  5047747 aaaatataaatcaaacacatgtaaaaagtcataactacacaatttttaat 5047796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 26507250 - 26507193
Alignment:
Q  26 atatgtattaccctattgatcctctacttatttactggcttgattctctgccaaattt 83  Q
    |||||||||||||||||| |||||| ||| |||  ||| |||||||||| ||||||||    
T  26507250 atatgtattaccctattgttcctctgcttgtttcttggtttgattctcttccaaattt 26507193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 27214023 - 27213986
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataa 358  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  27214023 tcttaaaaatacaagtcaaacatatgtaaaagtcataa 27213986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 34908628 - 34908575
Alignment:
Q  338 aaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    |||||||||||||||| |||| |||| ||||||| ||||||| |||| ||||||    
T  34908628 aaacacatgtaaaagtaataagtacacaattttttatataaatattactacttt 34908575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 361
Target Start/End: Complemental strand, 29373212 - 29373172
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataatta 361  Q
    |||||||||||||| |||||| ||| |||||||||||||||    
T  29373212 tcttaaaaatacaagtcaaacgcatataaaagtcataatta 29373172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 28147554 - 28147476
Alignment:
Q  314 aattttatctta-aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  28147554 aattttatcttagaaaatacaaatcatatacatgtaaaagtcataattacgtaatttttaatgtaaaaattactacttt 28147476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 413
Target Start/End: Original strand, 1397845 - 1397945
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtccta 412  Q
    |||||||||||  || |||||||||||| ||| ||||| |||||| |||| |||||||||||||||||||| ||| |||| ||| ||||||||| |||||    
T  1397845 aattttatcttggaactacaaatcaaacgcatttaaaaatcataactacacaatttttaatataaaaattactacttttaaatgcttaaacaatctccta 1397944  T
Q  413 a 413  Q
    |    
T  1397945 a 1397945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 30965832 - 30965766
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 380  Q
    ||||||||||| |||||| |||||||||||| ||  ||||||||| |||| ||||||||||||||||    
T  30965832 aattttatcttgaaaatataaatcaaacacacgttgaagtcataaatacacaatttttaatataaaa 30965766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 33878249 - 33878195
Alignment:
Q  317 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttt 371  Q
    |||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||    
T  33878249 tttatcctaaaaatacaaatcaaacatatgtaaaagtcataactacacaattttt 33878195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 42161594 - 42161540
Alignment:
Q  317 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttt 371  Q
    |||||||||||||||||||||||||| || | |||||||||| ||||||||||||    
T  42161594 tttatcttaaaaatacaaatcaaacatatatgaaagtcataactacataattttt 42161540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 23803453 - 23803380
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatta 387  Q
    ||||||||||||||| || || |||||||||| ||||||| ||||||| |||| |||| ||| ||||| |||||    
T  23803453 aattttatcttaaaattataagtcaaacacatttaaaagtaataattatataaatttttatacaaaaaatatta 23803380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 413
Target Start/End: Original strand, 27219875 - 27219967
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactttat--atggttaaacaatgtcctaa 413  Q
    |||| ||||||||||| |||||||  ||||| |||||| |||| |||||||||| ||||||||| |||||| |  ||| ||||||||| ||||||    
T  27219875 tcttgaaaatacaaattaaacaca--taaaaatcataactacacaatttttaatgtaaaaattactactttttgaatgtttaaacaatatcctaa 27219967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 406
Target Start/End: Complemental strand, 29648632 - 29648541
Alignment:
Q  316 ttttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaat 406  Q
    |||| ||||||||||| || | |||||||||||||| |||||| ||||||||||| |||  |||| ||| ||| |||  |||||||||||||    
T  29648632 ttttgtcttaaaaatataagttaaacacatgtaaaaatcataactacataattttcaatgcaaaagttactacatttgaatggttaaacaat 29648541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 34533076 - 34533111
Alignment:
Q  349 aaagtcataattacataatttttaatataaaaatta 384  Q
    ||||||||||||| ||||||||||||||||||||||    
T  34533076 aaagtcataattatataatttttaatataaaaatta 34533111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 42646479 - 42646432
Alignment:
Q  316 ttttatcttaaaaatacaaatcaaacacatgtaaaagtcataattaca 363  Q
    ||||||||||||||||||||| ||| | |||| |||||||||||||||    
T  42646479 ttttatcttaaaaatacaaataaaatatatgtcaaagtcataattaca 42646432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 35316477 - 35316523
Alignment:
Q  317 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattaca 363  Q
    ||||||||||||||||||||| |||| || |||||||||||| ||||    
T  35316477 tttatcttaaaaatacaaatctaacatatttaaaagtcataaataca 35316523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 29414664 - 29414733
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactt 390  Q
    |||| ||||||||| ||||| ||||||||||||||||  || | |||||| ||| ||||||||| |||||    
T  29414664 tcttgaaaatacaagtcaaatacatgtaaaagtcatacctatacaattttcaatgtaaaaattactactt 29414733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 42753334 - 42753269
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaa 379  Q
    ||||||||||| ||||||||| ||||| ||| |||||| |||||| |  |||||||| ||||||||    
T  42753334 aattttatcttgaaaatacaactcaaatacaagtaaaattcataactgtataattttcaatataaa 42753269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 40332892 - 40332944
Alignment:
Q  339 aacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||||| ||||| | ||||||| ||||||||| |||||||||||| ||||||    
T  40332892 aacacatataaaaattataattatataatttttcatataaaaattactacttt 40332944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 32815263 - 32815199
Alignment:
Q  315 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaa 379  Q
    |||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| ||||    
T  32815263 attttatcttaaaaatacaagtcaaacatatgtaaaagtaataattacataatttttaatgtaaa 32815199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 11453436 - 11453378
Alignment:
Q  326 aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||    
T  11453436 aaaatacaaatcaaacgcatgtaaaagtcataactacataatttttcatgtaaaaatta 11453378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 10553829 - 10553883
Alignment:
Q  315 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattt 369  Q
    |||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||    
T  10553829 attttatcttaaaaatacaaattaaatacatgttaaagtcatagttacataattt 10553883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 12047308 - 12047239
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||| |||| ||||||| || |||||||||    
T  12047308 aattttatcttaaga-tacaagtcaaacacatgtaaaagtcataactacacaatttttcatgtaaaaatta 12047239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 36901676 - 36901606
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    |||||| || |||||||||| |||||||| |||||||| | |||| ||||||||||||||| |||||||||    
T  36901676 aattttgtcataaaaatacagatcaaacaaatgtaaaaattataactacataatttttaatgtaaaaatta 36901606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 386
Target Start/End: Complemental strand, 33135174 - 33135109
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatt 386  Q
    ||||||||||| ||||||||| |||||||||||  ||| || |||||||||||||||||| |||||    
T  33135174 tcttaaaaataaaaatcaaacgcatgtaaaagtattaactatataatttttaatataaaatttatt 33135109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 1035255 - 1035204
Alignment:
Q  323 ttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaat 374  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||| ||||    
T  1035255 ttaaaaatacaaatcaaacacatgtcgaagtcataactacataatttataat 1035204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 41834857 - 41834786
Alignment:
Q  313 taattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    ||||| |||||||||||||||| ||||||| || ||||||| ||||||||| |||||| ||  |||||||||    
T  41834857 taattgtatcttaaaaatacaagtcaaacatatataaaagtaataattacacaattttcaacgtaaaaatta 41834786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 32784884 - 32784839
Alignment:
Q  338 aaacacatgtaaaagtcataattacataatttttaatataaaaatt 383  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||    
T  32784884 aaacacatgtaaaaatcataactacataatttttaatgtaaaaatt 32784839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 5807400 - 5807452
Alignment:
Q  333 aaatcaaacacatgtaaaagtcataattacata-atttttaatataaaaatta 384  Q
    ||||||||||||||||||||| |||||||||||  ||||| ||||||||||||    
T  5807400 aaatcaaacacatgtaaaagttataattacatattttttttatataaaaatta 5807452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 413
Target Start/End: Complemental strand, 38902256 - 38902164
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa--attattactttatatggttaaacaatgtcctaa 413  Q
    |||| ||||| ||| ||||||| || ||||||||||||||||| |||||| ||| |||||  ||||||  |||| ||| ||||||||||||||||    
T  38902256 tcttgaaaattcaagtcaaacatatataaaagtcataattacacaattttcaatgtaaaagtattatt--tttagatgcttaaacaatgtcctaa 38902164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 40287571 - 40287615
Alignment:
Q  326 aaaatacaaatcaaacacatgtaaaagtcataattacataatttt 370  Q
    |||||||||||||||||||||||||| | |||| |||||||||||    
T  40287571 aaaatacaaatcaaacacatgtaaaaatgataactacataatttt 40287615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 17922378 - 17922316
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatt 383  Q
    ||||| ||||| || |||||||| ||| |||||||||||||||| |||||  |||||||||||    
T  17922378 tcttagaaatataagtcaaacacgtgtcaaagtcataattacattattttctatataaaaatt 17922316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 11818191 - 11818248
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataa 378  Q
    |||| ||||||||| ||||| ||||||||||||||||| || | |||||| |||||||    
T  11818191 tcttgaaaatacaagtcaaaaacatgtaaaagtcataactatacaattttcaatataa 11818248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 41619319 - 41619254
Alignment:
Q  315 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 380  Q
    |||||| ||| |||||| |||| ||||| || |||||| |||||||| |||||||||||| |||||    
T  41619319 attttaactttaaaatataaattaaacaaatataaaagccataattatataatttttaatgtaaaa 41619254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 50564213 - 50564301
Alignment:
Q  325 aaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactttatatggttaaacaatgtcctaa 413  Q
    |||||||||| |||||||  | |||||||||||| || |||||||||||| ||||| ||| || ||   ||| ||||||||||| ||||    
T  50564213 aaaaatacaagtcaaacatctctaaaagtcataagtaaataatttttaatgtaaaagttactatttcgaatgcttaaacaatgttctaa 50564301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 29045426 - 29045330
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtc 409  Q
    |||| ||| ||||||||| ||||||||||| ||| |||||||||| || ||||||||||||  |||||||| ||| |||| ||||||||||||||||    
T  29045426 aattatatattaaaaatataaatcaaacacttgttaaagtcataactatataatttttaatgcaaaaattactacttttagatggttaaacaatgtc 29045330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 13138594 - 13138528
Alignment:
Q  317 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatt 383  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||||||||  ||| ||||||||    
T  13138594 tttatcttgaaaatacaagtcaaacacatataaaagtcataattacataatttccaatgtaaaaatt 13138528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 5264496 - 5264423
Alignment:
Q  315 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac 388  Q
    ||||||| |||||||||||||| ||| | |||||||||| ||||||| ||||||||| || |||||||||||||    
T  5264496 attttattttaaaaatacaaattaaatatatgtaaaagttataattagataattttttatgtaaaaattattac 5264423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 39351119 - 39351043
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactt 390  Q
    ||||||||| | ||||||||| |||||||||| ||||||||||||||| | ||||| |||| ||||||||| |||||    
T  39351119 aattttatcatgaaaatacaagtcaaacacatctaaaagtcataattatacaatttctaatgtaaaaattactactt 39351043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 3135684 - 3135624
Alignment:
Q  324 taaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    ||||||||||| ||||||| || |||||||||||| |||| |||||||||| |||||||||    
T  3135684 taaaaatacaagtcaaacatatataaaagtcataactacacaatttttaatgtaaaaatta 3135624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 1299936 - 1299999
Alignment:
Q  317 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 380  Q
    ||||| |||||||||||| |||||||||||||||| ||| |||||| ||| ||| |||||||||    
T  1299936 tttattttaaaaatacaagtcaaacacatgtaaaaatcacaattacgtaaatttcaatataaaa 1299999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 27674802 - 27674872
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    |||| ||||||||| |||||||||||| || || |||| |||||||||||||||  | |||||||||||||    
T  27674802 tcttgaaaatacaagtcaaacacatgtgaatgttataactacataatttttaatgcataaattattacttt 27674872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 42430546 - 42430468
Alignment:
Q  336 tcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtcctaa 413  Q
    |||||||||||| ||||||||||||||| | |||  ||| ||||||||||||| |||  ||| ||||||||||||||||    
T  42430546 tcaaacacatgtcaaagtcataattacaaattttgaaatgtaaaaattattacttttgaatgattaaacaatgtcctaa 42430468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 414
Target Start/End: Original strand, 2054068 - 2054145
Alignment:
Q  338 aaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtcctaaa 414  Q
    ||||||||||||||||||||| | || |||||| ||| ||||||| | ||| |||||||| |||||||||| ||||||    
T  2054068 aaacacatgtaaaagtcataactgcacaattttcaatgtaaaaatgactacttttatatgtttaaacaatgccctaaa 2054145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 35556444 - 35556483
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagt 353  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  35556444 aattttctcttaaaaatataaatcaaacacatgtaaaagt 35556483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 14640971 - 14641042
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatta 387  Q
    ||||||||||| ||||||  ||||||||| || ||||| |||||||||||| |||||| || | ||||||||||    
T  14640971 aattttatcttgaaaata--aatcaaacatatataaaaatcataattacattattttttatgtgaaaattatta 14641042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 16054453 - 16054400
Alignment:
Q  326 aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 380  Q
    ||||||||| |||||||||| |||||||||||| ||||||||||| ||| |||||    
T  16054453 aaaatacaagtcaaacacatataaaagtcataa-tacataattttcaatgtaaaa 16054400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 409
Target Start/End: Complemental strand, 6633089 - 6633025
Alignment:
Q  346 gtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtc 409  Q
    ||||||||||||| || | || ||||||||||||||||| ||| |||| ||| ||||||||||||    
T  6633089 gtaaaagtcataactatacaaattttaatataaaaattactacttttaaatgtttaaacaatgtc 6633025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 2072262 - 2072187
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattact 389  Q
    |||||| |||| |||||||||||||||||||| ||||||| |||| |||| |||||||||||||||| ||| ||||    
T  2072262 aattttctcttgaaaatacaaatcaaacacatataaaagttataactacacaatttttaatataaaagttactact 2072187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 13177842 - 13177772
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||||||  ||||||||| ||| ||||||    
T  13177842 tcttgaaaatacaagtcaaacacatgtaaaagtcataactacataatttccaatataaaagttactacttt 13177772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 34505216 - 34505272
Alignment:
Q  336 tcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttta 392  Q
    |||||||||||||||||||||||||| | |||||| ||||| ||| |||||||||||    
T  34505216 tcaaacacatgtaaaagtcataattatacaattttcaatatcaaagttattacttta 34505272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 32094373 - 32094422
Alignment:
Q  324 taaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaa 373  Q
    |||||||| || ||||| |||||||||||||||||||| |||||||||||    
T  32094373 taaaaatataagtcaaatacatgtaaaagtcataattatataatttttaa 32094422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 41909205 - 41909278
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatta 387  Q
    |||| |||||||||||||||| | ||||| || |||||||||||| || | |||||||||| ||||||| ||||    
T  41909205 aattctatcttaaaaatacaagttaaacatatctaaaagtcataactatacaatttttaatgtaaaaatgatta 41909278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 1090048 - 1090104
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttta 372  Q
    |||||| |||| ||||||||| ||||||||||  ||||||||||| |||||||||||||    
T  1090048 aattttgtcttgaaaatacaagtcaaacacat--aaaagtcataactacataattttta 1090104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 7621502 - 7621572
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    |||||| |||| || |||||||||||||||||||||||||| | ||| || ||| ||||| ||| ||||||    
T  7621502 tcttaagaatataagtcaaacacatgtaaaagtcataattataaaatgttcaatgtaaaagttactacttt 7621572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 10921722 - 10921767
Alignment:
Q  326 aaaatacaaatcaaacacatgtaaaagtcataattacataattttt 371  Q
    ||||||||| |||||||||||||||| |||||| |||| |||||||    
T  10921722 aaaatacaagtcaaacacatgtaaaaatcataactacacaattttt 10921767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 24186077 - 24186013
Alignment:
Q  326 aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||||||| |||||| |||||||||||||||| || ||||| |||||| |||||  |||||||||    
T  24186077 aaaatacaagtcaaac-catgtaaaagtcataactatataatatttaatgtaaaagatattacttt 24186013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 515207 - 515139
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattact 389  Q
    |||| ||||||||| ||||| | ||||||||||||||| |||| |||||  ||| ||||||||| ||||    
T  515207 tcttgaaaatacaagtcaaatatatgtaaaagtcataactacacaatttccaatttaaaaattactact 515139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 32967726 - 32967770
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataa 358  Q
    ||||||||||| ||||||||| |||||| ||||||||| ||||||    
T  32967726 aattttatcttcaaaatacaagtcaaactcatgtaaaaatcataa 32967770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 14812369 - 14812292
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||||||||| ||||||||| ||||||| |||||||||| ||||||||| |||||| ||| ||||| ||| ||||||    
T  14812369 aattttatcttgaaaatacaagtcaaacatatgtaaaagttataattacacaattttcaatgtaaaagttaatacttt 14812292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 7920223 - 7920288
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatt 386  Q
    |||| |||||||||||||||||||||||||| |||||| |||| |||||| ||| || ||||||||    
T  7920223 tcttgaaaatacaaatcaaacacatgtaaaaatcataactacacaattttcaatgtagaaattatt 7920288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 12956928 - 12956884
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataa 358  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  12956928 aattttatcttaaaaatacaagtcaaacacatgtcaaagtcataa 12956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 28489215 - 28489143
Alignment:
Q  317 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattact 389  Q
    ||||| || ||||||||| | ||||| | ||||| |||||||||||||||||||| | |||||||||||||||    
T  28489215 tttattttgaaaatacaagttaaacataagtaaacgtcataattacataattttttaaataaaaattattact 28489143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 37199982 - 37200038
Alignment:
Q  322 cttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataa 378  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||| ||| |||||||    
T  37199982 cttaaaaatataaatcaaacacatttaaaaatcataattacataactttcaatataa 37200038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 7670182 - 7670249
Alignment:
Q  318 ttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattat 385  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||| | |||||| ||| |||| |||||    
T  7670182 ttatcttaaaaatacaagtcaaacatatggaaaagtcataattatacaattttcaatgtaaatattat 7670249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 28538031 - 28538078
Alignment:
Q  344 atgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  28538031 atgtaaaagtcataattacataatttttattataaaagttattccttt 28538078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 414
Target Start/End: Original strand, 31608186 - 31608286
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactttatatggttaaacaatgtcctaa 413  Q
    |||||| |||| ||||| |||  | ||||||| ||||| |||||| || | |||||||||||||||||||| || ||  |||| |||||||||| |||||    
T  31608186 aattttgtcttgaaaatgcaagactaacacatataaaaatcataactatacaatttttaatataaaaattactatttgttatgcttaaacaatgccctaa 31608285  T
Q  414 a 414  Q
    |    
T  31608286 a 31608286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 18375556 - 18375493
Alignment:
Q  317 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 380  Q
    ||||||||||||||| || |||| || |  ||||||| ||||||||||||||||| ||||||||    
T  18375556 tttatcttaaaaatataagtcaagcatacataaaagtaataattacataattttttatataaaa 18375493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 13490864 - 13490934
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    |||||| |||| |||||| ||  ||||||||||||||| |||||| || | |||||| |||||||||||||    
T  13490864 aattttgtcttgaaaatataaggcaaacacatgtaaaaatcataactatacaattttcaatataaaaatta 13490934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 37528727 - 37528773
Alignment:
Q  344 atgtaaaagtcataattacataatttttaatataaaaattattactt 390  Q
    |||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  37528727 atgtaaaaggaataattacataattttttatataaaaattatcactt 37528773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 1758546 - 1758457
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtc 409  Q
    ||||||||||| || ||||||||||||| ||||||||  |||| ||||||| ||  |||| ||| ||| |||| ||| ||||||||||||    
T  1758546 tcttaaaaatataagtcaaacacatgtagaagtcatatctacacaattttttatgcaaaagttactacttttagatgcttaaacaatgtc 1758457  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 391
Target Start/End: Original strand, 37331809 - 37331886
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    |||||||||||||||||| || ||||| | || | ||| ||||||||||| |||| | |||| |||||||| ||||||    
T  37331809 aattttatcttaaaaatataagtcaaatatatattaaaatcataattacacaattgtcaatacaaaaattactacttt 37331886  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 10727147 - 10727076
Alignment:
Q  310 aaataattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaat 382  Q
    ||||||||||||||| ||||| ||| ||||| | |||||||||| ||||||| | ||||||| || |||||||    
T  10727147 aaataattttatcttgaaaattcaagtcaaatatatgtaaaagttataattata-aattttttatgtaaaaat 10727076  T

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Target: scaffold0223 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 411
Target Start/End: Complemental strand, 22227 - 22132
Alignment:
Q  317 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtcct 411  Q
    ||||||||||||||| || ||||| |||| ||||||| |  | ||||||||||||||| ||||||||||||| |||| ||| ||||||||| ||||    
T  22227 tttatcttaaaaatataagtcaaatacatataaaagttacgactacataatttttaatgtaaaaattattacttttaaatgtttaaacaatatcct 22132  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 413
Target Start/End: Original strand, 7984599 - 7984692
Alignment:
Q  321 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtcctaa 413  Q
    |||| ||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||| ||  ||| |||  ||| ||||||||||||||||    
T  7984599 tcttgaaaatacaagtcaaacacatgtaaaagtcataactacaaaattttcaatgtaaaatttgctacttttggatgcttaaacaatgtcctaa 7984692  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 40070 - 40114
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataa 358  Q
    |||||| |||| |||||||||||||||||||||||||||||||||    
T  40070 aattttgtcttgaaaatacaaatcaaacacatgtaaaagtcataa 40114  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 4057446 - 4057384
Alignment:
Q  322 cttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 384  Q
    |||||||||| || ||||| |||||| ||||||||||||  |||| |||||||||||||||||    
T  4057446 cttaaaaatataagtcaaatacatgttaaagtcataattctataaattttaatataaaaatta 4057384  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 25211746 - 25211671
Alignment:
Q  316 ttttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 391  Q
    |||||||||||||||| || |  ||||||||||||| | ||||||||| || |||| |||| ||||||| ||||||    
T  25211746 ttttatcttaaaaatataagttgaacacatgtaaaaataataattacacaaatttttatattaaaattactacttt 25211671  T

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Target: scaffold0172 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 19457 - 19524
Alignment:
Q  314 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaa 381  Q
    ||||||||||| |||| | || |||||||||||||||||| ||||||||| || |||| ||| |||||    
T  19457 aattttatcttgaaaacataagtcaaacacatgtaaaagtaataattacacaagtttttatacaaaaa 19524  T

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