View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6317_high_3 (Length: 400)
Name: NF6317_high_3
Description: NF6317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6317_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 400
Target Start/End: Complemental strand, 3432779 - 3432398
Alignment:
| Q |
14 |
tgaaatgaaacatgataagactaggttttctaattgggctaaacattggtgttaatcgttgaatttcatcttggtgctttagctccttttggttggctgg |
113 |
Q |
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| T |
3432779 |
tgaaatgaaacatgataagactaggttttctaattgggctaaagattggtgttaatcgttgaatttcatcttggtgctttagctccttt-ggttggatgg |
3432681 |
T |
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| Q |
114 |
ggtagattgcagtggcgagaagacttaaaaaggcactttgagtataggtatgagaagtgtaggtttacataacaatagttacacctgatttcttacaccg |
213 |
Q |
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| T |
3432680 |
ggtagattgcagtggcgagaggacttaaaaaggcactttgagtatgggtatgagaagtgtaggtttacagaacaatagttacacctgatttcttacactg |
3432581 |
T |
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| Q |
214 |
tcttcgtattagtatcttatcatagaataaagggaccaaaaacctcctcattatctacccaaggtccttccttagggacaagctacaatctttgatgctt |
313 |
Q |
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| T |
3432580 |
tcttcgtattcgtatcttatcatagaataaagggaccaaaagcctcctcattatctacccaaggtcctt-cttagggacaagctacaatctttgatgctt |
3432482 |
T |
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| Q |
314 |
aagtcagtgtataggtataagaaagaagcttgcagaacaatgtttacacctgcttcattacactgtctttcttttatatcgcagaat |
400 |
Q |
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| T |
3432481 |
aagtcagtgtataggtataagaaag-agcatgcagaacaatgtttacacctgcttcattacac--tctttcttttatatcggagaat |
3432398 |
T |
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