View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6317_low_4 (Length: 340)
Name: NF6317_low_4
Description: NF6317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6317_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 3432278 - 3431968
Alignment:
| Q |
11 |
cacagatcactgggaacatttttgatttatcgtaggattcaccaacatgcttgccttctgaggatcttcaagacggggactcctctcttgtctatgggct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
3432278 |
cacagatcactgggaacatttttgatttatcgtaggattcaccaacatgcttgccttctgaggatcttcaagatgaggactcctctcttgtctatgggct |
3432179 |
T |
|
| Q |
111 |
gattttgagagagtcaacatcgctttatgtcattattatagtttttaaatgttttgaggtgtataaaaaagatttggacatattttaatgtcacactttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3432178 |
gattttgagagagtcaacatcgctttatgtcattattatagtttttaaatgttttgaggtgtataaaaaagatttggacatattttaatgtcacactttt |
3432079 |
T |
|
| Q |
211 |
gcacttatgtgtctatatatctcacgactatcaaaggatcttcacccgactatcaaaggagaaaggatcttctcta-ttttttaaaataaatggaaatgt |
309 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3432078 |
gcact--tgtgtctatatatctcacgactatcaaaggatcttcacccgactatcaaaggagaaaggatcttctctatttttttaaaataaatggaaatgt |
3431981 |
T |
|
| Q |
310 |
c-ttggttaaaga |
321 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
3431980 |
ctttggttaaaga |
3431968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 41377960 - 41377919
Alignment:
| Q |
142 |
attattatagtttttaaatgttttgaggtgtataaaaaagat |
183 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41377960 |
attactatagtttttaaatgttgtgaggtgtataaaaaagat |
41377919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 36973835 - 36973882
Alignment:
| Q |
142 |
attattatagtttttaaatgttttgaggtgtataaaaaagatttggac |
189 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
36973835 |
attactatagtttttaaatgatttgtggtgtatataaaagatttggac |
36973882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 44414957 - 44415004
Alignment:
| Q |
141 |
cattattatagtttttaaatgttttgaggtgtataaaaaagatttggac |
189 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
44414957 |
cattactaaagtttttaaatgttttggggtgtat-aaaaagatttggac |
44415004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University