View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6317_low_5 (Length: 338)
Name: NF6317_low_5
Description: NF6317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6317_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 102 - 336
Target Start/End: Original strand, 47119935 - 47120171
Alignment:
| Q |
102 |
cacattccaaagcctccaccctgatggttaaactctttaaatcccacggtagcaccctcgccggtttacgcgcactaggctatgatatcaccgccgaaga |
201 |
Q |
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| T |
47119935 |
cacaatccaaagcctccaccctgagggttgaactctttaaatcccacggtagcaccctcgccggtttacgcgcactaggctatgatatcaccgccgaaga |
47120034 |
T |
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| Q |
202 |
ataccacgggtaactaattagcttatgcataatcacaatgaatcatcgtgattttgacatacacttaatttaattta-----aacataactactttgtat |
296 |
Q |
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| T |
47120035 |
ataccacgggtaac---ttagcttatgcataatcacagtggatcattgtgattttgacatacacttaatttaatttaaacataacataactactttgtat |
47120131 |
T |
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| Q |
297 |
tttactccaaagtagcatgatgctaattaagttttcgttc |
336 |
Q |
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| T |
47120132 |
tttactccaaagtagcatgatgctaattaagttttcgttc |
47120171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 47119534 - 47119632
Alignment:
| Q |
1 |
accccacctcaaactcggcttactccaacaatgtgacaagctcactccgcgatagctgtgtctatcccatctcatctgtccatgttcccttcatttcat |
99 |
Q |
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|||||||||||||||||||||| | ||||||||||| ||||| |||| ||||||| ||||||||||| ||||||| |||||||||| |||||||||||| |
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| T |
47119534 |
accccacctcaaactcggcttattacaacaatgtgaaaagctgactcagcgatagttgtgtctatccaatctcatttgtccatgttaccttcatttcat |
47119632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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