View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6318_low_1 (Length: 215)
Name: NF6318_low_1
Description: NF6318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6318_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 8074943 - 8074747
Alignment:
| Q |
1 |
ttgagactccattatgggatttaattctacaaaatccgactcattccaagctattcaatgatgctatggaaagtgattctaatatggtgaggtttgcaat |
100 |
Q |
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| T |
8074943 |
ttgagactccattatgggatttaattttacaaaatccgactcattccaagttattcaatgatgctatggaaagtgattctaatatggtgaggtttgcaat |
8074844 |
T |
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| Q |
101 |
gagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcct |
197 |
Q |
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| T |
8074843 |
gagtgattgcaaatcagtttttgagggcttaacttcgttggttgatgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcct |
8074747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 8066457 - 8066312
Alignment:
| Q |
52 |
tattcaatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttgg |
151 |
Q |
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| T |
8066457 |
tattcaatgatgctatggagagtgactctaatatgatgaggtttgcaatgagtgattgcaaatcagtttttgagggcataacttctttggttgatgttgg |
8066358 |
T |
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| Q |
152 |
aggtggaaccggaaacactgttaaaattatttgtgaggcgtttcct |
197 |
Q |
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| T |
8066357 |
aggtggaaccggaaacacggttaaaattatttctgaggcgtttcct |
8066312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 34951456 - 34951317
Alignment:
| Q |
57 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
156 |
Q |
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| T |
34951456 |
aatgatgctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgttggtggtg |
34951357 |
T |
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| Q |
157 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
196 |
Q |
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| T |
34951356 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
34951317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 34946985 - 34946846
Alignment:
| Q |
57 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
156 |
Q |
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| T |
34946985 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatgttggtggtg |
34946886 |
T |
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| Q |
157 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
196 |
Q |
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| T |
34946885 |
gaactggaaacacagctaagattatatgtgaggcgtttcc |
34946846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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