View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6319_low_1 (Length: 402)
Name: NF6319_low_1
Description: NF6319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6319_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 44982958 - 44982572
Alignment:
| Q |
1 |
agttgggtgagtcaaccatagtccttttcttcttcccctgcttaatatgttgactcccacccattataatttgtttttgacataatttattatgctaatt |
100 |
Q |
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| T |
44982958 |
agttgggtgagtcaaccatagtccttttcttcttcccctgcttaatatgttgactcccacccattataatttgtttttgacataatttattatgctaatt |
44982859 |
T |
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| Q |
101 |
tcaacaggaaagcacttcctattgcagttgccgtgggagttgtagttcttgcaggattatacttctatctcaacagcacattttagctgaatgtttgata |
200 |
Q |
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| T |
44982858 |
tcaacaggaaagcacttcctattgcagttgccgtgggagttgtagttcttgcaggattatacttctatctcaacagcacattttagctgaatgtttgata |
44982759 |
T |
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| Q |
201 |
cattatgttttacatcataaaatcagacctttaatgtattcatgttcttttgtttatttggttcgtcaacacttttacacctttagtttcatctgttcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44982758 |
cattatgttttacatcataaaatcagacctttaatgtattcatgttcttttgtttatttggttcgtcaacacttttacacctttagtttcatctgttcaa |
44982659 |
T |
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| Q |
301 |
tttccaatagcttgcaacaagaatgttgtcataagttaaacagaaaataaagcatggatatagaaaagtaagttcaaattttcattt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44982658 |
tttccaatagcttgcaacaagaatgttgtcataagttaaacagaaaataaagcatggatatagaaaagtaagttaaaattttcattt |
44982572 |
T |
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