View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6319_low_2 (Length: 370)
Name: NF6319_low_2
Description: NF6319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6319_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 74 - 360
Target Start/End: Complemental strand, 37404158 - 37403872
Alignment:
| Q |
74 |
ttttttccacgttctctcatgtttctgaaatctctatccttaaaatctcatttatatttctatttcattgtatactctctttctctctcattttcaatgg |
173 |
Q |
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| T |
37404158 |
ttttttccacgttctctcatgtttctgaaatctctatccttaaaatctcatttatatttctatttcattgtatactctctttctctctcattttcaatgg |
37404059 |
T |
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| Q |
174 |
atgatgaccttatcacatgagaggtatcattcattgtgtttcaccctagccaactagtcaccttaaaattatgtaacagaaggaatcaacccagccccac |
273 |
Q |
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| T |
37404058 |
atgatgatcttatcacatgagaggtatcattcattgtgtttcaccctagccaactagtcaccttaaaattatgtaacagaaggaatcaacccagccccac |
37403959 |
T |
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| Q |
274 |
atgacaatgacatgttagttatttgtatattcaatgcttgcattgcttatatcatctatttttatttatttgatctgtctttttctt |
360 |
Q |
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| T |
37403958 |
atgacaatgacatgttagttatttgtatattcaatgcctgcattgcttatatcatctatttgtatttatttgatctgtctttttctt |
37403872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 37404314 - 37404270
Alignment:
| Q |
22 |
tctctctcatgtgtctaaaactccacccttaaatctcattttctt |
66 |
Q |
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| T |
37404314 |
tctctctcacgtgtctaaaactccacccttaaatctcattttctt |
37404270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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