View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6319_low_4 (Length: 295)
Name: NF6319_low_4
Description: NF6319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6319_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 35 - 274
Target Start/End: Complemental strand, 17356249 - 17356012
Alignment:
| Q |
35 |
atgaatttagaataatttttcatgaaaaatccaaaacaattatatgctgcttttctacaaacaataaggtgaaggaaaacaacaaatcacgaaatcgaag |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17356249 |
atgaatttagaataatttttcatgaaaaatccaaaacaattat--gctgcttttgtacaaacaagaaggtgaagaaaaacaacaaatcacgaaatcgaag |
17356152 |
T |
|
| Q |
135 |
ttcgcatgaagcacacaataatacaaatcaacaaaatctccaaaatcccaaaacattgatttaactcaataaaatcaatttcaataataaaattctagca |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17356151 |
ttcgcatgaagcacacaataatacaaatcaacaaaatctccaaaatcccaaaatattgatttaactcaataaaatcaatttcaataataaaattctagca |
17356052 |
T |
|
| Q |
235 |
aaaacatataacacaagcatcacaacaaaccctaaaagat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17356051 |
aaaacatataacacaagcatcacaacaaaccctaaaagat |
17356012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 36619953 - 36620110
Alignment:
| Q |
80 |
gctgcttttctacaaacaataaggtgaaggaaaacaacaaatcacgaaatcgaagttcgcatgaagcacacaataatacaaatcaacaaaatctccaaaa |
179 |
Q |
| |
|
||||||| | || ||||||||| |||||||||||||||||| | | |||| ||||||| |||||| |||| || |||| || ||||||||| || ||| |
|
|
| T |
36619953 |
gctgcttctgtagaaacaataaagtgaaggaaaacaacaaaacgcaaaattgaagttcacatgaaacacaaaacaataaaattcaacaaaaaaacc-aaa |
36620051 |
T |
|
| Q |
180 |
tcccaaaacattgatttaactcaataaaatcaatttcaataataaaattctagcaaaaa |
238 |
Q |
| |
|
||||||||| | |||| | ||||||||||| ||||||||||| ||| ||| |||||||| |
|
|
| T |
36620052 |
tcccaaaacctagattcagctcaataaaattaatttcaataaaaaatttcaagcaaaaa |
36620110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University