View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6320_high_2 (Length: 251)
Name: NF6320_high_2
Description: NF6320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6320_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 43193313 - 43193551
Alignment:
| Q |
1 |
aaatttccctccttataaataggggcatnnnnnnnnn-tcagaagaggaaaagagaggaaaacgaaaacctaaccaaccaattacaaatccagtgagtga |
99 |
Q |
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| T |
43193313 |
aaatttccctccttataaataggggcataaaaaaaaaatcagaagaggaaaagagaggaaaacgaaaacctaaccaaccaattacaaatccagtgagtga |
43193412 |
T |
|
| Q |
100 |
cattttaccaacccaaatggcgaagcagctaccttgtgacgccgatggtgtttgcatggcgtgtaaaacgaagcctctagaaactgaaacccttcattgt |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43193413 |
cattttaccaactcaaatggcgaagcagctaccttgtgacgccgatggtgtttgcatggcgtgtaaaacgaagcctctagaaactgaaacccttcattgt |
43193512 |
T |
|
| Q |
200 |
cgaacatgtgcaactccatggcatgttccttgtttacct |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
43193513 |
cgaacatgtgcaactccatggcatgttccttgtttacct |
43193551 |
T |
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