View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6320_low_1 (Length: 412)
Name: NF6320_low_1
Description: NF6320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6320_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 18104089 - 18103697
Alignment:
| Q |
1 |
ctaatagccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttcactatccaaaaacc |
100 |
Q |
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| T |
18104089 |
ctaatagccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaacttcactatccaaaaacc |
18103990 |
T |
|
| Q |
101 |
tctctggtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattgatcaaaacttgtgcatcttttggaataatgtagtc |
200 |
Q |
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| T |
18103989 |
tctctggtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattgatcaaaacttgtgcatcttttggaataatgtagtc |
18103890 |
T |
|
| Q |
201 |
accaacttcaacatctgtttctgctttacgaggaagtaataagggaactgatggatgtaaacgaagagtttcttttataactgcttgcatgtatggtaac |
300 |
Q |
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| T |
18103889 |
accaacttcaacatctgtttctgctttacgaggaagtaataagggaactgatggatgtaaacgaagagtttcttttataactgcttgcatgtatggtaac |
18103790 |
T |
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| Q |
301 |
ttagctatgtctgtttcttgtattggaataccttttccaacaacttgttcaagttctttttgtacttttgacatgatttctggattttgcatt |
393 |
Q |
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| T |
18103789 |
ttagctatgtctgtttcttgtattggaatacctttgccaacaacttgttcaagttctttttgtacttttgacatgatttctggattttgcatt |
18103697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 18094081 - 18093689
Alignment:
| Q |
1 |
ctaatagccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttcactatccaaaaacc |
100 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
18094081 |
ctaatagccaaaggcaagccaggacaaattcttctaccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttcattgtccaaaaacc |
18093982 |
T |
|
| Q |
101 |
tctctggtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattgatcaaaacttgtgcatcttttggaataatgtagtc |
200 |
Q |
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| T |
18093981 |
tttctggtataaaaacattagcattatcccatttatttgggtctctaccaatcacccatgcattaaccaacacttgtgcatcttttggaataatgtattc |
18093882 |
T |
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| Q |
201 |
accaacttcaacatctgtttctgctttacgaggaagtaataagggaactgatggatgtaaacgaagagtttcttttataactgcttgcatgtatggtaac |
300 |
Q |
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| T |
18093881 |
accaatttcaacatcgatttctgctttgcgaggtaataacaagggaactggtggatgtaaacgaaatgtttcttttataactgcttgcatgtatggtaac |
18093782 |
T |
|
| Q |
301 |
ttagctatgtctgtttcttgtattggaataccttttccaacaacttgttcaagttctttttgtacttttgacatgatttctggattttgcatt |
393 |
Q |
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| T |
18093781 |
ttagctatgtctgtttcttgtattggaatacctttgccaacaacttgttcaagttccttttgtacttttaacatgatttctggattgtgcatt |
18093689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 23244719 - 23244653
Alignment:
| Q |
18 |
accaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatt |
84 |
Q |
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||||||||| |||||||||||||| |||||||| | ||| | |||||| ||||| ||||||||||| |
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| T |
23244719 |
accaggacacattcttcttccagatccaaatggtagaagttgaaaatgttgtcccctaacatcaatt |
23244653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 23346848 - 23346803
Alignment:
| Q |
19 |
ccaggacaaattcttcttccagacccaaatggaataagctcaaaat |
64 |
Q |
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| T |
23346848 |
ccaggacaaattcttctaccagcaccaaatggaataagttcaaaat |
23346803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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