View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6321_high_12 (Length: 246)
Name: NF6321_high_12
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 34017539 - 34017780
Alignment:
| Q |
3 |
aatctaattaaagtaaatggcattgaaagcagcctagctacagtatttctaaatattaaacaagacaaaagacccatgcgatgtcataccagttcataag |
102 |
Q |
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| T |
34017539 |
aatctaattaaagtaaatggcattgaaagcagtctagctacagtatttctaaatattaaacaagacaaaagacccatgcgatgtcataccagtttataag |
34017638 |
T |
|
| Q |
103 |
attccaaattttctgggagccgataacgcatttgtccagctttcaataataaagggtggtgcaaattaag--------------ctggatactgagttaa |
188 |
Q |
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| T |
34017639 |
attccaaattttctgggagccgataacgcatttgtccagctttcaataataaagggtggtgcaaattaagctgaataagtctgcctggatcctgagttaa |
34017738 |
T |
|
| Q |
189 |
tgtcgcagatagaaccatctttgtcagcctgggataaggctt |
230 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34017739 |
tgtcgcagatagaaccatctttgccagcctgggataaggctt |
34017780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 34008684 - 34008784
Alignment:
| Q |
2 |
gaatctaattaaagtaaatggcattgaaagcagcctagctacagtatttctaaatattaaacaagacaaaagacccatgcgatgtcataccagttcataa |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34008684 |
gaatctaattaaagtaaatggcattgaaagcagcctagctacagtatttctaaatattaaacaagacaaaagacccatgcgatgtcataccagtttataa |
34008783 |
T |
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| Q |
102 |
g |
102 |
Q |
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| T |
34008784 |
g |
34008784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 33154903 - 33155144
Alignment:
| Q |
3 |
aatctaattaaagtaaatggcattgaaagcagcctagctacagtatttctaaatattaaacaagacaaaagacccatgcgatgtcataccagttcataag |
102 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33154903 |
aatctaattaaagtaaatggcattgaaagcagtctagctacagtatttctaaatattaaacaagacaaaagacccatgcgatgtcataccagtttataag |
33155002 |
T |
|
| Q |
103 |
attccaaattttctgggagccgataacgcatttgtccagctttcaataataaagggtggtgcaaattaag--------------ctggatactgagttaa |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
33155003 |
attccaaattttctgggagccgataacgcatttgtccagctttcaataataaagggtggtgcaaattaagctgaataagtctgcctggatcctgagttaa |
33155102 |
T |
|
| Q |
189 |
tgtcgcagatagaaccatctttgtcagcctgggataaggctt |
230 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33155103 |
tgtcgcagatagaaccatctttgccagcctgggataaggctt |
33155144 |
T |
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