View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6321_high_14 (Length: 229)
Name: NF6321_high_14
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2186081 - 2186300
Alignment:
| Q |
1 |
ctcaacgcttctatctgacattgttgaagtaaaccaattaccaagttttaagcgtgaagatggtgagataagatacgcctttcgtattttaacacgacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2186081 |
ctcaacgcttctatctgacattgttgaagtaaaccaattaccaagttttaagcgtgaagatggtgagataagatacgcctttcgtattttaacacgacat |
2186180 |
T |
|
| Q |
101 |
ggattacgatatgaatgctcgagcagttctaagatacaggtatgcctaacttaagaatatttgattagtcnnnnnnnngttgagaatatttgttttttag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
2186181 |
ggattacgatatgaatgctcgagcagttctaagatacaggtatgcctaacttaagaatattcgattagtcaaaaaaaagttgagaatatttgttttttag |
2186280 |
T |
|
| Q |
201 |
aagttaacactattgatgat |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2186281 |
aagttaacactattgatgat |
2186300 |
T |
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