View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6321_low_1 (Length: 922)

Name: NF6321_low_1
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6321_low_1
NF6321_low_1
[»] chr1 (12 HSPs)
chr1 (18-704)||(19456452-19457137)
chr1 (775-913)||(17242012-17242156)
chr1 (835-913)||(9010966-9011044)
chr1 (835-911)||(24302999-24303075)
chr1 (775-874)||(9008762-9008865)
chr1 (775-823)||(9011063-9011110)
chr1 (835-874)||(17240784-17240823)
chr1 (859-913)||(13970040-13970094)
chr1 (775-824)||(24304310-24304358)
chr1 (775-807)||(48030257-48030289)
chr1 (777-807)||(43402266-43402296)
chr1 (775-823)||(17240718-17240767)
[»] scaffold0268 (3 HSPs)
scaffold0268 (16-287)||(22356-22628)
scaffold0268 (446-504)||(22135-22193)
scaffold0268 (374-419)||(22191-22237)
[»] chr7 (8 HSPs)
chr7 (16-287)||(10197460-10197732)
chr7 (775-913)||(5737178-5737322)
chr7 (446-504)||(10197896-10197954)
chr7 (775-874)||(5769254-5769359)
chr7 (775-823)||(23525582-23525631)
chr7 (835-913)||(12629337-12629416)
chr7 (775-821)||(6591270-6591316)
chr7 (374-419)||(10197852-10197898)
[»] chr8 (10 HSPs)
chr8 (18-283)||(25025954-25026220)
chr8 (840-911)||(40463515-40463586)
chr8 (835-913)||(9310831-9310909)
chr8 (775-823)||(38973754-38973802)
chr8 (775-823)||(39004852-39004900)
chr8 (775-807)||(14099746-14099778)
chr8 (775-823)||(42480899-42480947)
chr8 (775-806)||(3917797-3917828)
chr8 (859-913)||(38973842-38973897)
chr8 (859-913)||(39004940-39004995)
[»] scaffold0262 (1 HSPs)
scaffold0262 (840-911)||(4293-4364)
[»] chr3 (8 HSPs)
chr3 (840-911)||(11150344-11150415)
chr3 (771-823)||(42277228-42277280)
chr3 (835-895)||(51832437-51832497)
chr3 (860-913)||(52043333-52043386)
chr3 (859-913)||(39605670-39605725)
chr3 (773-823)||(39605582-39605631)
chr3 (859-913)||(54672720-54672774)
chr3 (775-823)||(15438471-15438520)
[»] chr4 (6 HSPs)
chr4 (835-911)||(47862000-47862076)
chr4 (773-823)||(56083353-56083403)
chr4 (835-874)||(44355359-44355398)
chr4 (859-913)||(47378639-47378693)
chr4 (777-807)||(47861936-47861966)
chr4 (860-913)||(52706704-52706757)
[»] scaffold0049 (1 HSPs)
scaffold0049 (775-807)||(3943-3975)
[»] scaffold0484 (1 HSPs)
scaffold0484 (775-806)||(11537-11568)
[»] chr6 (2 HSPs)
chr6 (775-806)||(12603938-12603969)
chr6 (775-806)||(25483421-25483452)
[»] chr5 (1 HSPs)
chr5 (775-806)||(29875948-29875979)
[»] chr2 (1 HSPs)
chr2 (775-822)||(29042337-29042384)
[»] scaffold0071 (1 HSPs)
scaffold0071 (775-823)||(23671-23720)


Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 18 - 704
Target Start/End: Complemental strand, 19457137 - 19456452
Alignment:
Q  18 agattttcaaggacgatgccgtcggaggcagcgaagaaggcgaggacatgagagatgaagtggcgttccccgtcggtgaggttttgccagtgcttgagat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19457137 agattttcaaggacgatgccgtcggaggcagcgaagaaggcgaggacatgagagatgaagtggcgttcgccgtcggtgaggttttgccagtgcttgagat 19457038  T
Q  118 cggaggaaagatcgacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcg 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19457037 cggaggaaagatcgacttcttcagcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcg 19456938  T
Q  218 gtctgggtttggggcaagaaggggttcttctggaaaagcaggcatgtttggtttgggaaattgaaattgaaagnnnnnnngtgattattctgataggttg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||    
T  19456937 gtctgggtttggggcaagaaggggttcttctggaaaagcaggcatgtttggtttgggaaattgaaattgaaagaaaaaa-gtgattattttgataggttg 19456839  T
Q  318 aagtgttgtgagtaagaatgaaggggtgaagggtttaaataatgatttctgagtggaaataggagcgggtgaatttgaaaattttggggtg-ttttggat 416  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||||||| | ||||||||    
T  19456838 aagtgttgtgagtaagaatgaagaggtgaagggtttaaataatgattttttagtggaaataggagcgggagaatttgtaaattttgggggggttttggat 19456739  T
Q  417 ttgaaaaagtgtgcgggagaagaaggaaattggaaactacgggggtgaattttgaaatgaatttggggaagctttcatgagaagatttatctggtggagg 516  Q
    ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19456738 ttggaaaagcgtgcgggagaagaaggaaattggaaactacgcgggtgaattttgaaatgaatttggggaagctttcatgagaagatttatctggtggagg 19456639  T
Q  517 gtagtttggggagagaaaaatgtggggaaaacggtattttggggttttgaggagggaaaaatcagggataaggatgaaatggtgcgttgggatttttgga 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19456638 gtagtttggggagagaaaaatgtggggaaaacggtattttggggttttgaggagggaaaaatcagggataaggatgaaatggtgcgttgggatttttgg- 19456540  T
Q  617 ataagtttgaaaattttgggttttttgatcggtggtaaaatttgtgacgtggtagtgtttaattgacttttgaaattggaatgagtgt 704  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19456539 attagtttgaaaatttggggttttttgatcggtggtaaaatttgtgacgtggtagtgtttaattgacttttgaaattggaatgagtgt 19456452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 775 - 913
Target Start/End: Complemental strand, 17242156 - 17242012
Alignment:
Q  775 ggttaataggcttttaccccc-tgccatttggggactttttggtataccc---tgtcnnnnnnn--cttgtagattcccccttaccattagaagattctt 868  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||   ||||         ||||||||||||||||| ||||||||||||||||    
T  17242156 ggttaataggcttttacccccctgccatttgggggctttttggtatacccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattctt 17242057  T
Q  869 tggtttacacccccaagccatctgactagattaatgtgatgatgt 913  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  17242056 tggtttacacccccaaaccatctgactagattaatgtgatgatgt 17242012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 835 - 913
Target Start/End: Complemental strand, 9011044 - 9010966
Alignment:
Q  835 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 913  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  9011044 cttgtagatttccccttgccattagaagattctttggtttacacccccaaaccatctgactggattaatgtgatgatgt 9010966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 835 - 911
Target Start/End: Original strand, 24302999 - 24303075
Alignment:
Q  835 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 911  Q
    |||| |||||||||||| | |||||||||||||||| ||||||||| |||||||||||| | |||||||||||||||    
T  24302999 cttggagattcccccttgcaattagaagattctttgatttacaccctcaagccatctgaatggattaatgtgatgat 24303075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 775 - 874
Target Start/End: Original strand, 9008762 - 9008865
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggggactttttggtata--ccctgtc--nnnnnnncttgtagattcccccttaccattagaagattctttg 870  Q
    |||||||||||||||||||||||||||||||||   ||||||||||  |||||||         ||||||||||||||||| ||||||||||||||||||    
T  9008762 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattctttg 9008861  T
Q  871 gttt 874  Q
    ||||    
T  9008862 gttt 9008865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 775 - 823
Target Start/End: Complemental strand, 9011110 - 9011063
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggggactttttggtataccc 823  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  9011110 ggttaataggtttttaccccctgccatttgggg-ctttttggtataccc 9011063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 835 - 874
Target Start/End: Original strand, 17240784 - 17240823
Alignment:
Q  835 cttgtagattcccccttaccattagaagattctttggttt 874  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  17240784 cttgtagattcccccttgccattagaagattctttggttt 17240823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 859 - 913
Target Start/End: Original strand, 13970040 - 13970094
Alignment:
Q  859 gaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 913  Q
    ||||||||||||||||| |||||||| |||| ||||| |||||||| ||||||||    
T  13970040 gaagattctttggtttatacccccaaaccatatgactggattaatgagatgatgt 13970094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 775 - 824
Target Start/End: Complemental strand, 24304358 - 24304310
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggggactttttggtataccct 824  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  24304358 ggttaataggtttttaccccctgccatttgggga-tttttggtttaccct 24304310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 775 - 807
Target Start/End: Complemental strand, 48030289 - 48030257
Alignment:
Q  775 ggttaataggcttttaccccctgccatttgggg 807  Q
    |||||||||||||||||||||||||||||||||    
T  48030289 ggttaataggcttttaccccctgccatttgggg 48030257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 777 - 807
Target Start/End: Original strand, 43402266 - 43402296
Alignment:
Q  777 ttaataggcttttaccccctgccatttgggg 807  Q
    |||||||||||||||||||||||||||||||    
T  43402266 ttaataggcttttaccccctgccatttgggg 43402296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 823
Target Start/End: Original strand, 17240718 - 17240767
Alignment:
Q  775 ggttaataggctttta-ccccctgccatttggggactttttggtataccc 823  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||    
T  17240718 ggttaataggcttttacccccctgccatttgggggtcttttggtataccc 17240767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 22628 - 22356
Alignment:
Q  16 caagattttcaaggacgatgccgtcggaggcagcgaagaaggcgaggacatgagagatgaagtggcgttccccgtcggtgaggttttgccagtgcttgag 115  Q
    |||||||||||||||| || ||||| ||||| ||||||||||| || || |||||||||||||||||||| ||||| |||||||| | ||||||||||||    
T  22628 caagattttcaaggacaattccgtctgaggcggcgaagaaggcaagaacgtgagagatgaagtggcgttcgccgtctgtgaggttgttccagtgcttgag 22529  T
Q  116 atcggaggaaagatcgacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaat 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22528 atcggaggaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaat 22429  T
Q  216 cggtctgggtttggggcaagaaggggttcttctggaaaagcaggcatgtttgg-tttgggaaattgaaattga 287  Q
    |||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  22428 cggtctgggtttggtgcgagaagtggttcttctggaaaagcaggcatgtttggttttaggaaattgaaattga 22356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 446 - 504
Target Start/End: Complemental strand, 22193 - 22135
Alignment:
Q  446 ttggaaactacgggggtgaattttgaaatgaatttggggaagctttcatgagaagattt 504  Q
    ||||||| |||| ||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  22193 ttggaaagtacgcgggtgaattttgaaaggaaattggggaagctttgatgagaagattt 22135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 22237 - 22191
Alignment:
Q  374 aaataggagcgggtgaatttgaaa-attttggggtgttttggatttg 419  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||    
T  22237 aaataggagcgggtgaatttgaaattttttggggggttttggatttg 22191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 10197460 - 10197732
Alignment:
Q  16 caagattttcaaggacgatgccgtcggaggcagcgaagaaggcgaggacatgagagatgaagtggcgttccccgtcggtgaggttttgccagtgcttgag 115  Q
    |||||||||||||||| || ||||| ||||| ||||||||||| || || |||||||||||||||||||| ||||| |||||||| | ||||||||||||    
T  10197460 caagattttcaaggacaattccgtctgaggcggcgaagaaggcaagaacgtgagagatgaagtggcgttcgccgtctgtgaggttgttccagtgcttgag 10197559  T
Q  116 atcggaggaaagatcgacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaat 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10197560 atcggaggaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaat 10197659  T
Q  216 cggtctgggtttggggcaagaaggggttcttctggaaaagcaggcatgtttgg-tttgggaaattgaaattga 287  Q
    |||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  10197660 cggtctgggtttggtgcgagaagtggttcttctggaaaagcaggcatgtttggttttaggaaattgaaattga 10197732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 775 - 913
Target Start/End: Original strand, 5737178 - 5737322
Alignment:
Q  775 ggttaataggcttttaccccc-tgccatttggggactttttggtataccc---tgtcnnnnnnn--cttgtagattcccccttaccattagaagattctt 868  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||   ||||         ||||||||||||||||| ||||||||||||||||    
T  5737178 ggttaataggcttttacccccctgccatttgggggctttttggtatacccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattctt 5737277  T
Q  869 tggtttacacccccaagccatctgactagattaatgtgatgatgt 913  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  5737278 tggtttacacccccaaaccatctgactagattaatgtgatgatgt 5737322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 446 - 504
Target Start/End: Original strand, 10197896 - 10197954
Alignment:
Q  446 ttggaaactacgggggtgaattttgaaatgaatttggggaagctttcatgagaagattt 504  Q
    ||||||| |||| ||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  10197896 ttggaaagtacgcgggtgaattttgaaaggaaattggggaagctttgatgagaagattt 10197954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 775 - 874
Target Start/End: Complemental strand, 5769359 - 5769254
Alignment:
Q  775 ggttaataggcttttaccccc-tgccatttggggactttttggtata---ccctgtc--nnnnnnncttgtagattcccccttaccattagaagattctt 868  Q
    ||||||||||||||||||||| ||||||||||||   ||||||||||   |||||||         ||||||||||||||||| ||||||||||||||||    
T  5769359 ggttaataggcttttacccccctgccatttgggggtcttttggtatacccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattctt 5769260  T
Q  869 tggttt 874  Q
    ||||||    
T  5769259 tggttt 5769254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 775 - 823
Target Start/End: Original strand, 23525582 - 23525631
Alignment:
Q  775 ggttaataggcttttacccc-ctgccatttggggactttttggtataccc 823  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  23525582 ggttaataggcttttaccccgctgccatttgggggatttttggtataccc 23525631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 835 - 913
Target Start/End: Complemental strand, 12629416 - 12629337
Alignment:
Q  835 cttgtagattcccccttaccattagaagattctttggtttacaccccca-agccatctgactagattaatgtgatgatgt 913  Q
    |||| |||||||||||| ||||||  |||||||||||||||| |||| |  ||||||||||| ||| |||| ||||||||    
T  12629416 cttgaagattcccccttgccattattagattctttggtttacccccctagcgccatctgactggataaatgggatgatgt 12629337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 775 - 821
Target Start/End: Original strand, 6591270 - 6591316
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggggactttttggtatac 821  Q
    ||||||||||||||||||||||||||||||| |   |||||||||||    
T  6591270 ggttaataggcttttaccccctgccatttggtggtattttggtatac 6591316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 10197852 - 10197898
Alignment:
Q  374 aaataggagcgggtgaatttgaaa-attttggggtgttttggatttg 419  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||    
T  10197852 aaataggagcgggtgaatttgaaattttttggggggttttggatttg 10197898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 4e-96; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 25025954 - 25026220
Alignment:
Q  18 agattttcaaggacgatgccgtcggaggcagcgaagaaggcgaggacatgagagatgaagtggcgttccccgtcggtgaggttttgccagtgcttgagat 117  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||| | |||||| |  ||||    
T  25025954 agattttcgaggacgataccgtcggaggcggcgaagaaggcgaggatgtgagagatgaagtggcgttcgccgtcggtgaggttgttccagtgttgaagat 25026053  T
Q  118 cggaggaaagatcgacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcg 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25026054 cggaggaaagatcgacttcttcggcggtccagaaagaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatacagaatcg 25026153  T
Q  218 gtctgggtttggggcaagaaggggttcttctggaaaagcaggca-tgtttggtttgggaaattgaaa 283  Q
    |||||||||||| || ||||| ||||||||||| |||| ||||| |||||||||| || ||||||||    
T  25026154 gtctgggtttggagcgagaagaggttcttctgggaaagaaggcattgtttggttttgggaattgaaa 25026220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 840 - 911
Target Start/End: Complemental strand, 40463586 - 40463515
Alignment:
Q  840 agattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 911  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||    
T  40463586 agattcccccttaccattagaagattctttgatttacacccccaagccatctgattggattaatatgatgat 40463515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 835 - 913
Target Start/End: Complemental strand, 9310909 - 9310831
Alignment:
Q  835 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 913  Q
    |||| |||||||||||| |||| |||||||||| ||||| |||||||||||| || ||| | |||||||| ||||||||    
T  9310909 cttggagattcccccttgccatgagaagattctctggttcacacccccaagctatatgaatggattaatgagatgatgt 9310831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 775 - 823
Target Start/End: Original strand, 38973754 - 38973802
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggggactttttggtataccc 823  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  38973754 ggttaataggtttttaccccctgccatttgggggttttttggtataccc 38973802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 775 - 823
Target Start/End: Original strand, 39004852 - 39004900
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggggactttttggtataccc 823  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  39004852 ggttaataggtttttaccccctgccatttgggggttttttggtataccc 39004900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 775 - 807
Target Start/End: Original strand, 14099746 - 14099778
Alignment:
Q  775 ggttaataggcttttaccccctgccatttgggg 807  Q
    |||||||||||||||||||||||||||||||||    
T  14099746 ggttaataggcttttaccccctgccatttgggg 14099778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 775 - 823
Target Start/End: Original strand, 42480899 - 42480947
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggggactttttggtataccc 823  Q
    ||||||||||||||||||||||||||||| |||  |||||||| |||||    
T  42480899 ggttaataggcttttaccccctgccatttaggggttttttggtttaccc 42480947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 806
Target Start/End: Original strand, 3917797 - 3917828
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggg 806  Q
    ||||||||||||||||||||||||||||||||    
T  3917797 ggttaataggcttttaccccctgccatttggg 3917828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 859 - 913
Target Start/End: Original strand, 38973842 - 38973897
Alignment:
Q  859 gaagattctttggtttaca-cccccaagccatctgactagattaatgtgatgatgt 913  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||||  ||||||||    
T  38973842 gaagattctttggtttacaccccccaaaccatatgactagattaataggatgatgt 38973897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 859 - 913
Target Start/End: Original strand, 39004940 - 39004995
Alignment:
Q  859 gaagattctttggtttaca-cccccaagccatctgactagattaatgtgatgatgt 913  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||||  ||||||||    
T  39004940 gaagattctttggtttacaccccccaaaccatatgactagattaataggatgatgt 39004995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 840 - 911
Target Start/End: Complemental strand, 4364 - 4293
Alignment:
Q  840 agattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 911  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||    
T  4364 agattccctcttgccattagaagattatttggtttacacccccaagccatctgattggattaatatgatgat 4293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 840 - 911
Target Start/End: Original strand, 11150344 - 11150415
Alignment:
Q  840 agattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 911  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||| ||||||| | |||||||||||||||    
T  11150344 agatccccccttgccattagaagattccttggtttacacccccaagtcatctgattggattaatgtgatgat 11150415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 771 - 823
Target Start/End: Original strand, 42277228 - 42277280
Alignment:
Q  771 ttatggttaataggcttttaccccctgccatttggggactttttggtataccc 823  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  42277228 ttatggttaataggcttttaccccctgccatttgggttttttttggtataccc 42277280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 835 - 895
Target Start/End: Complemental strand, 51832497 - 51832437
Alignment:
Q  835 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgact 895  Q
    ||||||||||| |||||  |||||||||||||||| ||| ||||||||||||||| |||||    
T  51832497 cttgtagattctcccttgtcattagaagattctttagttaacacccccaagccatatgact 51832437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 860 - 913
Target Start/End: Complemental strand, 52043386 - 52043333
Alignment:
Q  860 aagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 913  Q
    |||||| ||||||||||||||||||| ||||||||| ||| |||| ||||||||    
T  52043386 aagattatttggtttacacccccaagtcatctgactggatcaatgagatgatgt 52043333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 859 - 913
Target Start/End: Original strand, 39605670 - 39605725
Alignment:
Q  859 gaagattctttggtttaca-cccccaagccatctgactagattaatgtgatgatgt 913  Q
    ||||||||||||||||||| ||||||| |||| ||||| |||||||| ||||||||    
T  39605670 gaagattctttggtttacaccccccaaaccatatgactggattaatgggatgatgt 39605725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 773 - 823
Target Start/End: Original strand, 39605582 - 39605631
Alignment:
Q  773 atggttaataggcttttaccccctgccatttggggactttttggtataccc 823  Q
    |||||||||||||||||| ||||||||||||||||  |||||||| |||||    
T  39605582 atggttaataggctttta-cccctgccatttgggggttttttggtgtaccc 39605631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 859 - 913
Target Start/End: Original strand, 54672720 - 54672774
Alignment:
Q  859 gaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 913  Q
    |||||||||||| ||||||||| ||| |||| ||||| |||||||| ||||||||    
T  54672720 gaagattctttgatttacaccctcaaaccatatgactggattaatgggatgatgt 54672774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 823
Target Start/End: Original strand, 15438471 - 15438520
Alignment:
Q  775 ggttaataggctttta-ccccctgccatttggggactttttggtataccc 823  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||    
T  15438471 ggttaataggcttttacccccctgccatttgagggttttttggtataccc 15438520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 835 - 911
Target Start/End: Original strand, 47862000 - 47862076
Alignment:
Q  835 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 911  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||| |||| |||||||| | |||||||||| ||||    
T  47862000 cttggagatccccccttgccattagaagattctttggtttacacctccaaaccatctgattggattaatgtggtgat 47862076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 773 - 823
Target Start/End: Original strand, 56083353 - 56083403
Alignment:
Q  773 atggttaataggcttttaccccctgccatttggggactttttggtataccc 823  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||    
T  56083353 atggttaataggcttttaccccctgccatttgggggtcttttggtataccc 56083403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 835 - 874
Target Start/End: Complemental strand, 44355398 - 44355359
Alignment:
Q  835 cttgtagattcccccttaccattagaagattctttggttt 874  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  44355398 cttgtagattcccccttgctattagaagattctttggttt 44355359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 859 - 913
Target Start/End: Complemental strand, 47378693 - 47378639
Alignment:
Q  859 gaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 913  Q
    ||||||||||||||| | |||||||||| || ||||| |||||||| ||||||||    
T  47378693 gaagattctttggttcatacccccaagctatatgactggattaatgagatgatgt 47378639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 777 - 807
Target Start/End: Original strand, 47861936 - 47861966
Alignment:
Q  777 ttaataggcttttaccccctgccatttgggg 807  Q
    |||||||||||||||||||||||||||||||    
T  47861936 ttaataggcttttaccccctgccatttgggg 47861966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 860 - 913
Target Start/End: Complemental strand, 52706757 - 52706704
Alignment:
Q  860 aagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 913  Q
    |||||| ||||||||||||| ||||||||||||||| ||| ||||  |||||||    
T  52706757 aagattatttggtttacacctccaagccatctgactggatcaatgaaatgatgt 52706704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 775 - 807
Target Start/End: Complemental strand, 3975 - 3943
Alignment:
Q  775 ggttaataggcttttaccccctgccatttgggg 807  Q
    |||||||||||||||||||||||||||||||||    
T  3975 ggttaataggcttttaccccctgccatttgggg 3943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 806
Target Start/End: Original strand, 11537 - 11568
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggg 806  Q
    ||||||||||||||||||||||||||||||||    
T  11537 ggttaataggcttttaccccctgccatttggg 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 806
Target Start/End: Original strand, 12603938 - 12603969
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggg 806  Q
    ||||||||||||||||||||||||||||||||    
T  12603938 ggttaataggcttttaccccctgccatttggg 12603969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 806
Target Start/End: Complemental strand, 25483452 - 25483421
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggg 806  Q
    ||||||||||||||||||||||||||||||||    
T  25483452 ggttaataggcttttaccccctgccatttggg 25483421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 806
Target Start/End: Original strand, 29875948 - 29875979
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggg 806  Q
    ||||||||||||||||||||||||||||||||    
T  29875948 ggttaataggcttttaccccctgccatttggg 29875979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 822
Target Start/End: Original strand, 29042337 - 29042384
Alignment:
Q  775 ggttaataggcttttaccccctgccatttggggactttttggtatacc 822  Q
    |||||||||||||||||||||||| ||||||||   ||||||||||||    
T  29042337 ggttaataggcttttaccccctgctatttgggggtcttttggtatacc 29042384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 823
Target Start/End: Complemental strand, 23720 - 23671
Alignment:
Q  775 ggttaataggcttttaccccc-tgccatttggggactttttggtataccc 823  Q
    ||||||||||||||||||||| ||||||||| ||  ||||||||||||||    
T  23720 ggttaataggcttttacccccctgccatttgagggttttttggtataccc 23671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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