View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6321_low_10 (Length: 334)
Name: NF6321_low_10
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 35684769 - 35685070
Alignment:
| Q |
20 |
atgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaacaa |
119 |
Q |
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| T |
35684769 |
atgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaacaa |
35684868 |
T |
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| Q |
120 |
ggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggagaag |
219 |
Q |
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| T |
35684869 |
ggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggagaag |
35684968 |
T |
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| Q |
220 |
gtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagttctaaacctagtagatccgaaattgttattg |
319 |
Q |
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| T |
35684969 |
gtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagttctaaacctagtagatccgaaattgttattg |
35685068 |
T |
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| Q |
320 |
tt |
321 |
Q |
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| T |
35685069 |
tt |
35685070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 40672362 - 40672148
Alignment:
| Q |
31 |
atgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaacaaggttttgcagt |
130 |
Q |
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| T |
40672362 |
atgcatgcaagaaccatgggatacaaggttgtgtttacagatcattctctgtacggttttgctgatgctggaagcattcacatgaacaaggtgttgcagt |
40672263 |
T |
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| Q |
131 |
ttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggagaaggtttttgtaat |
230 |
Q |
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| T |
40672262 |
ttaccttggcagatgtgactcaagccatatgtgtttctcacacaagcaaggaaaacacagtgttacggtcaggtttgccaccagataaagtttttgtaat |
40672163 |
T |
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| Q |
231 |
acctaatgctgttga |
245 |
Q |
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| T |
40672162 |
acctaatgccgttga |
40672148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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