View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6321_low_11 (Length: 292)
Name: NF6321_low_11
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2186001 - 2185772
Alignment:
| Q |
1 |
aaagaggtgaaactttagaaaaatatttttaaaagtgagtttatctctgaggcaaataaatatatatacatctcaagttttagtaagttaagattcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2186001 |
aaagaggtgaaactttagaaaaatatttttaaaagtgagtttatctccgaggcaaataaatatatatacatctcaagttttagtaagttaagattcaaat |
2185902 |
T |
|
| Q |
101 |
gtacttaaaattaaatccga-aaaatatatgcccttacttgctaattttagacataagttcattgtaaaggaatctaattcaatttggttgagcctgtga |
199 |
Q |
| |
|
||||||||||||||||| | | | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185901 |
gtacttaaaattaaatctaagagcacgtatgcccttacttgctaattttagacatacgttcattgtaaaggaatctaattcaatttggttgagcctgtga |
2185802 |
T |
|
| Q |
200 |
tttgtctaggctttcacaagaggaagtgtt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2185801 |
tttgtctaggctttcacaagaggaagtgtt |
2185772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 2185749 - 2185702
Alignment:
| Q |
229 |
tattaaataaaaattataccaaaggaaaagcataagtctagatgttct |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185749 |
tattaaataaaaattataccaaaggaaaagcataagtctagatgttct |
2185702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University