View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6321_low_15 (Length: 231)
Name: NF6321_low_15
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 13013058 - 13013268
Alignment:
| Q |
15 |
aaactttaaagataccatatagaaacgaataatcaacacatacgtagcatgaactgggatggcaatttcctcctgaccaaaaaagagtttttgaaatcct |
114 |
Q |
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| T |
13013058 |
aaactataaagataccatatagaaacgaataatcaacacatacgtagcatgaactgggatggcaatttcctcctgaccaaaaaagagtttttgaaatcct |
13013157 |
T |
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| Q |
115 |
tctgaacccgggttatttattccagcaaccgatggtgtttctcttcctgtgaatacaaaattacaacttccattaacattaaatgcagagatcaatttca |
214 |
Q |
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| T |
13013158 |
tctgaacccgggttaattattccagcaactgatggtgtttctctgcctgtgaatacaaaattacaacttccattaacattaaatgcaaagagcaatttca |
13013257 |
T |
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| Q |
215 |
cttgatgatgt |
225 |
Q |
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| T |
13013258 |
ctttatgatgt |
13013268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 13000781 - 13000893
Alignment:
| Q |
51 |
cacatacgtagcatgaactgggatggcaatttcctcctgaccaaaaaagagtttttgaaatccttctgaacccgggttatttattccagcaaccgatggt |
150 |
Q |
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| T |
13000781 |
cacacacgtagcatgaacagggatggcaatttcctcctgaccaaaaat-agtttttgaaatccttctaaacccgggttaattattccagcaactgatggt |
13000879 |
T |
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| Q |
151 |
gtttctcttcctgt |
164 |
Q |
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| T |
13000880 |
gtttctcttcctgt |
13000893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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