View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6321_low_2 (Length: 555)

Name: NF6321_low_2
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6321_low_2
NF6321_low_2
[»] chr4 (2 HSPs)
chr4 (13-215)||(16899505-16899701)
chr4 (13-215)||(18348020-18348216)
[»] chr3 (1 HSPs)
chr3 (13-215)||(13236275-13236471)
[»] chr5 (5 HSPs)
chr5 (362-539)||(2692694-2692871)
chr5 (213-293)||(2692545-2692625)
chr5 (88-214)||(40230907-40231035)
chr5 (213-288)||(2678954-2679029)
chr5 (414-473)||(2679169-2679228)
[»] chr1 (2 HSPs)
chr1 (51-212)||(6352282-6352442)
chr1 (76-212)||(10404067-10404203)
[»] scaffold1079 (1 HSPs)
scaffold1079 (82-215)||(512-645)
[»] chr2 (1 HSPs)
chr2 (110-215)||(42203278-42203382)
[»] scaffold0002 (2 HSPs)
scaffold0002 (126-213)||(197865-197952)
scaffold0002 (134-213)||(256308-256387)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 16899701 - 16899505
Alignment:
Q  13 tcatcatccattataacgaattggtgtggtaaattcaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcat 112  Q
    |||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899701 tcatcatccattataacgaattggtgtggtaaattcaaatt------taaatatatgaacagtaaataaaactagtattcgtattgagactagaactcat 16899608  T
Q  113 agggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899607 agggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 16899508  T

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Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 18348216 - 18348020
Alignment:
Q  13 tcatcatccattataacgaattggtgtggtaaattcaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcat 112  Q
    |||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18348216 tcatcatccattataacgaattggtgtggtaaattcaaatt------taaatatatgaacagtaaataaaactagtattcgtattgagactagaactcat 18348123  T
Q  113 agggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 212  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18348122 agggaagaaaatagatttatgaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 18348023  T

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Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 13236275 - 13236471
Alignment:
Q  13 tcatcatccattataacgaattggtgtggtaaattcaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcat 112  Q
    ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236275 tcatcatccattataacgaattggtgtggtaaat------tcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcat 13236368  T
Q  113 agggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 212  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236369 agggaagaaaatagatttatgaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 13236468  T

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Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 362 - 539
Target Start/End: Original strand, 2692694 - 2692871
Alignment:
Q  362 ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgtcgtactggaatgctcccgtttgttttttatgatacttttgggtatgtttatct 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2692694 ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgccgtactggaatgctcccgtttgttttttatgatacttttgggtatgtttatct 2692793  T
Q  462 ttacttttctaagttttaaataaaattcaaacacaaaaagtgtggtttgatttggtgtgtgattttgcaacaggtttg 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2692794 ttacttttctaagttttaaataaaattcaaacacaaaaagtgtggtttgatttggtgtgtgattttgcaacaggtttg 2692871  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 2692545 - 2692625
Alignment:
Q  213 cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggtgtata 293  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  2692545 cagttagcaacagctttattttcaaattcacctttcaagcaaggagctccaaacggttatgtcagctttagaaggtgtata 2692625  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 40230907 - 40231035
Alignment:
Q  88 tattcgtattgagactagaactcatagggaagaaaatagatttatgaatggaataaaatatgcaata-tttacagacaaaagtattcggttattggg-aa 185  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||   || |||| ||||||||||||| |||||||||| ||    
T  40230907 tattcttattgagactagaactcatcgggaagaaaatagatttgtgagttcaatgaaatatgtggtattttatagacaaaagtatttggttattgggaaa 40231006  T
Q  186 aaaatcaatatacttttaatgtcgaatca 214  Q
    |||||||||| |||||||| |||||||||    
T  40231007 aaaatcaatacacttttaacgtcgaatca 40231035  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 2678954 - 2679029
Alignment:
Q  213 cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggt 288  Q
    |||||| |||| || |||||| | ||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  2678954 cagttatcaactgcattatttgcgaattcacctttcaagcaaggagttccaaatggttatgtcagcttaagaaggt 2679029  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 2679169 - 2679228
Alignment:
Q  414 tggaatgctcccgtttgttttttatgatacttttgggtatgtttatctttacttttctaa 473  Q
    |||||||||||| |||| |||| ||||||||||||||||||||||  |||||||||||||    
T  2679169 tggaatgctcccatttgcttttcatgatacttttgggtatgtttacatttacttttctaa 2679228  T

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Target: chr1 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 6352282 - 6352442
Alignment:
Q  51 attcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttatgaatggaataaaatatgc 150  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6352282 attcaaattttaatatatgaatagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttatgaatggaataaaatatgt 6352381  T
Q  151 aatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 212  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6352382 aatatttacagacaaaagtattc-attattgggaaaaaatcaatatacttttaatgtcgaat 6352442  T

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Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 76 - 212
Target Start/End: Complemental strand, 10404203 - 10404067
Alignment:
Q  76 aaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcgg 175  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  10404203 aaataaaactagtattggtattgagactagaaatcatagggaagaaaatagatttatgaatggaataaaatatataatatttacaaacaaaagtattcgg 10404104  T
Q  176 ttattgggaaaaaatcaatatacttttaatgtcgaat 212  Q
    |||||||||||||||||||||||||||||||||||||    
T  10404103 ttattgggaaaaaatcaatatacttttaatgtcgaat 10404067  T

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Target: scaffold1079 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold1079
Description:

Target: scaffold1079; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 645 - 512
Alignment:
Q  82 aactagtattcgtattgagactagaactcatagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattg 181  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||  | || ||||||||||||||||||||||| ||    
T  645 aactagcattcttattgagactcgaactcatagggaagaaaatagatttatggatggaatcaaatatatagtagttacagacaaaagtattcggttagtg 546  T
Q  182 ggaaaaaatcaatatacttttaatgtcgaatcag 215  Q
    |  |||||||||||||||| ||||||||||||||    
T  545 gtgaaaaatcaatatacttctaatgtcgaatcag 512  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 42203278 - 42203382
Alignment:
Q  110 catagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcg 209  Q
    |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||    
T  42203278 catatggaaaaaaatagatttatgaatggaataatatatgcaatatttacagacaaaagtgttcggttatt-gtaaaaattcaatatacttttaatgtcg 42203376  T
Q  210 aatcag 215  Q
    ||||||    
T  42203377 aatcag 42203382  T

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Target: scaffold0002 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 197865 - 197952
Alignment:
Q  126 gatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc 213  Q
    |||||||| ||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  197865 gatttatggatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc 197952  T

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Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 256308 - 256387
Alignment:
Q  134 aatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc 213  Q
    |||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  256308 aatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc 256387  T

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