View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6321_low_4 (Length: 431)

Name: NF6321_low_4
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6321_low_4
NF6321_low_4
[»] chr7 (6 HSPs)
chr7 (11-283)||(6567567-6567835)
chr7 (291-431)||(6582943-6583083)
chr7 (306-431)||(6568799-6568924)
chr7 (94-283)||(6582167-6582351)
chr7 (11-88)||(36713655-36713732)
chr7 (21-67)||(6650294-6650340)
[»] scaffold0001 (1 HSPs)
scaffold0001 (21-88)||(67455-67522)
[»] scaffold0495 (1 HSPs)
scaffold0495 (11-88)||(8088-8165)
[»] chr6 (2 HSPs)
chr6 (11-88)||(10231365-10231442)
chr6 (398-431)||(13409878-13409911)
[»] chr5 (2 HSPs)
chr5 (11-88)||(42898670-42898746)
chr5 (31-88)||(14051109-14051166)
[»] chr4 (3 HSPs)
chr4 (11-85)||(15994184-15994258)
chr4 (395-431)||(33718960-33718996)
chr4 (398-431)||(33720982-33721015)
[»] chr2 (1 HSPs)
chr2 (23-88)||(14463087-14463151)
[»] chr8 (1 HSPs)
chr8 (11-87)||(33468103-33468179)
[»] chr3 (1 HSPs)
chr3 (398-431)||(43490169-43490202)
[»] chr1 (1 HSPs)
chr1 (398-431)||(44331879-44331912)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 6567567 - 6567835
Alignment:
Q  11 caaaggaagataaaatgttcagatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaaatttgtaggttgctcaatccctctc 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  6567567 caaaggaagataaaatgttcacatgttacaataactcagacaagctactacacagtaggcgaaagaaaataaaaaatttgtatgttgctcaatccctctc 6567666  T
Q  111 tccatagtcaaagtcattttttaaaagaaggaatatttcaaaaaattataattaagtcaagtaagctaattatttgttggttcgttaattatcatattag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6567667 tccatagtcaaagtcattttttaaaagaaggaatatttcaaaaaattataattaagtcaagtaagctaattatttgttggttcgttaattatcttattag 6567766  T
Q  211 aaggcatgcgcaaaataaaatagaaaaatatagcaccgatcgatgacactgacatgtacactttgaaggggaa 283  Q
    ||||||||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||    
T  6567767 aaggcatgcgcaaaataaaatagaaaaatatagcac----cgatgagactgacatgtacactttgaaggggaa 6567835  T

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Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 291 - 431
Target Start/End: Original strand, 6582943 - 6583083
Alignment:
Q  291 atatgatcttcttgcaatgaaagtaagaatgaattaatttgtgattatcatttttccttgttttgcatgtgatgttaatgaaagagaccaaaaagaaacc 390  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6582943 atatgatctttttgtaatgaaagtaaaaatgaattaatttgtgattctcatttttccttgttttgcatgtgatgttaatgaaagagaccaaaaagaaacc 6583042  T
Q  391 acactatagaggagtgagacagagaccatggggaaaatggg 431  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  6583043 acactatagaggagtgagacaaagaccatggggaaaatggg 6583083  T

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Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 306 - 431
Target Start/End: Original strand, 6568799 - 6568924
Alignment:
Q  306 aatgaaagtaagaatgaattaatttgtgattatcatttttccttgttttgcatgtgatgttaatgaaagagaccaaaaagaaaccacactatagaggagt 405  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6568799 aatgaaagtaagaatgaattgatttgtgattctcattttttcttgttttgcatgtgatgttaatgaaagagaccaaaaagaaaccacactatagaggagt 6568898  T
Q  406 gagacagagaccatggggaaaatggg 431  Q
    ||||||||||||||||||||||||||    
T  6568899 gagacagagaccatggggaaaatggg 6568924  T

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Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 94 - 283
Target Start/End: Original strand, 6582167 - 6582351
Alignment:
Q  94 gttgctcaatccctctctccatagtcaaagtcattttttaaaagaaggaatatttcaaaaaattataattaagtcaagtaagctaattatttgttggttc 193  Q
    ||||||||||| || |||  ||||||||||||||||| ||||||||||| |||||||||||||||||| |  |||||||||||||||||||| ||||||     
T  6582167 gttgctcaatcactttctggatagtcaaagtcatttt-taaaagaaggattatttcaaaaaattataacttggtcaagtaagctaattattttttggttt 6582265  T
Q  194 gttaattatcatattagaaggcatgcgcaaaataaaatagaaaaatatagcaccgatcgatgacactgacatgtacactttgaaggggaa 283  Q
     ||||||||| | || || ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  6582266 attaattatctttttggagggcatgcgcaaaataaaatagaaaaatatagcac----cgatgacactgacatgtacactttgaaggggaa 6582351  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 36713655 - 36713732
Alignment:
Q  11 caaaggaagataaaatgttcagatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaaatt 88  Q
    ||||||||  ||||||||||||||||||| |||||  | ||||| ||||||||||||  |||| ||||||||||||||    
T  36713655 caaaggaaattaaaatgttcagatgttacgataacataaacaaggtactacacagtagtcgaaggaaaataaaaaatt 36713732  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 6650294 - 6650340
Alignment:
Q  21 taaaatgttcagatgttacaataactcagacaagctactacacagta 67  Q
    |||||| |||||||||||||||||| || ||||||| ||||||||||    
T  6650294 taaaatattcagatgttacaataacacaaacaagctgctacacagta 6650340  T

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Target: scaffold0001 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 67455 - 67522
Alignment:
Q  21 taaaatgttcagatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaaatt 88  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||  | | |||||||||||||||    
T  67455 taaaatgttcagatgttacaataatacagacaagctactacacagtagcctagagaaaataaaaaatt 67522  T

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Target: scaffold0495 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 8165 - 8088
Alignment:
Q  11 caaaggaagataaaatgttcagatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaaatt 88  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||||| |||| ||   |||| |||||||||||||    
T  8165 caaaggaagctaaaatgttcagatgttacaataacactgacaagctactgcacaatagctgaaacaaaataaaaaatt 8088  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 10231442 - 10231365
Alignment:
Q  11 caaaggaagataaaatgttcagatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaaatt 88  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||||| |||| ||   |||| |||||||||||||    
T  10231442 caaaggaagctaaaatgttcagatgttacaataacactgacaagctactgcacaatagctgaaacaaaataaaaaatt 10231365  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 13409878 - 13409911
Alignment:
Q  398 agaggagtgagacagagaccatggggaaaatggg 431  Q
    |||||||||||||| |||||||||||||||||||    
T  13409878 agaggagtgagacaaagaccatggggaaaatggg 13409911  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 42898746 - 42898670
Alignment:
Q  11 caaaggaagataaaatgttcagatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaaatt 88  Q
    ||||||||| ||||||||||| |||||||||||||  |||||||||| |||||||||  |||| ||||||||||||||    
T  42898746 caaaggaagctaaaatgttca-atgttacaataacaaagacaagctattacacagtagccgaacgaaaataaaaaatt 42898670  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 14051166 - 14051109
Alignment:
Q  31 agatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaaatt 88  Q
    |||||||||||||||  ||||||||||||||| | |   |||||||||||||||||||    
T  14051166 agatgttacaataacatagacaagctactacataattgtcgaaagaaaataaaaaatt 14051109  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 15994258 - 15994184
Alignment:
Q  11 caaaggaagataaaatgttcagatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaa 85  Q
    ||||| || |||||| ||||| ||||||||||||| ||| |||||||||||| ||||  ||||||||||||||||    
T  15994258 caaagaaaaataaaaagttcaaatgttacaataacacagtcaagctactacagagtagccgaaagaaaataaaaa 15994184  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 33718960 - 33718996
Alignment:
Q  395 tatagaggagtgagacagagaccatggggaaaatggg 431  Q
    |||||||||||||||||||||||||||||||||||||    
T  33718960 tatagaggagtgagacagagaccatggggaaaatggg 33718996  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 33720982 - 33721015
Alignment:
Q  398 agaggagtgagacagagaccatggggaaaatggg 431  Q
    ||||||||||| ||||||||||||||||||||||    
T  33720982 agaggagtgaggcagagaccatggggaaaatggg 33721015  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 14463151 - 14463087
Alignment:
Q  23 aaatgttcagatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaaatt 88  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||||  |||||||||||||||||||    
T  14463151 aaatgtccagatgttacaa-aacacagacatgctactacacagtagccgaaagaaaataaaaaatt 14463087  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 33468103 - 33468179
Alignment:
Q  11 caaaggaagataaaatgttcagatgttacaataactcagacaagctactacacagtatgcgaaagaaaataaaaaat 87  Q
    ||||||||| ||||||| ||||||||||||||||| || |||| |||||| ||| ||   |||| ||||||||||||    
T  33468103 caaaggaagctaaaatggtcagatgttacaataacacaaacaaactactatacaatagttgaaataaaataaaaaat 33468179  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 43490202 - 43490169
Alignment:
Q  398 agaggagtgagacagagaccatggggaaaatggg 431  Q
    |||||||| |||||||||||||||||||||||||    
T  43490202 agaggagtaagacagagaccatggggaaaatggg 43490169  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 44331912 - 44331879
Alignment:
Q  398 agaggagtgagacagagaccatggggaaaatggg 431  Q
    |||||||| |||||||||||||||||||||||||    
T  44331912 agaggagtaagacagagaccatggggaaaatggg 44331879  T

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