View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6321_low_5 (Length: 418)
Name: NF6321_low_5
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 12494712 - 12495127
Alignment:
| Q |
1 |
cgaaattccttctgatccttaaatttgatattttcccatagggatcaaagtgtctctctaaatcccttgtcctggtgtgaacaggatcaaaatttataat |
100 |
Q |
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| T |
12494712 |
cgaaattccttctgatccttaaatttgatattttcccatagggatcaaagtgtctctctaaatcccttgtcctggtgtgaacaggatcaaaatttataat |
12494811 |
T |
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| Q |
101 |
aaacaaagtcttagatggttttgtattagttgaagatttctttgaatcgctaccagactttctgttgtcatgttctgcctaaaaatcataatataacaga |
200 |
Q |
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| T |
12494812 |
aaacaaagtcttcgatggttttgtattagttgaagatttctttgaatcgccaccagaccttctgttgtcacgttctgcctaaaaaacataatataacaga |
12494911 |
T |
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| Q |
201 |
atgtgtatattaaaatacccaaaattaaataattccaaaatcattcatttgaatgcaaatgtatctgtcacacaaatgagaacatccaccaaaagtatag |
300 |
Q |
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| T |
12494912 |
atgtgtatattaaaatacccaaaattaaataattccaaaatcattcatttgaatgcaaatgtatctgtcacacaaatgaaaacatccaccaaaagtatag |
12495011 |
T |
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| Q |
301 |
caattctcatgataatatcacacaccattattaaaatctaacaaaatgtggtaaagttttccaaaatgatttataaccaaaatgatccccaaatgccaat |
400 |
Q |
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| T |
12495012 |
caattctcatgataatat--cacaccattattaaaatctaacaaaatgtggtaaagttttccaaaatgatttataaccaaaatgatccccaaatgccaag |
12495109 |
T |
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| Q |
401 |
ctttaaagtatatgatga |
418 |
Q |
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| T |
12495110 |
ctttaaagtacatgatga |
12495127 |
T |
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