View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6321_low_6 (Length: 398)
Name: NF6321_low_6
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 28962898 - 28962530
Alignment:
| Q |
16 |
tcaaattcaccgtcaatccaatagtgtatattatatacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatccttgcagagaa |
115 |
Q |
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| T |
28962898 |
tcaaattcaccgtcaatccaatagtgtatattatatacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatcctagcagagaa |
28962799 |
T |
|
| Q |
116 |
tcaattttcttttactgctaaattttgaactgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcctctgcaact |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962798 |
tcaattttcttttactgctaaattttgaattgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcctctgcaact |
28962699 |
T |
|
| Q |
216 |
tcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctctatcattgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962698 |
tcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctctatcattgaa |
28962599 |
T |
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| Q |
316 |
agtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccacaaaaaccgcc |
384 |
Q |
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| T |
28962598 |
tgtttcagactttttcaactccctttgagcccaagcaacaggatcatcatcaccaccacaaaaaccgcc |
28962530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 176 - 381
Target Start/End: Complemental strand, 29002467 - 29002262
Alignment:
| Q |
176 |
aatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggac |
275 |
Q |
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||||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29002467 |
aatttcagaaaacgctgataagattcaagcctctgcaacttcatctgattattaaacttcttgataaaagcttcagctcttttattcaattcctcaggac |
29002368 |
T |
|
| Q |
276 |
tcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccaca |
375 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| || |
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| T |
29002367 |
tcattgatttttctcttttcaatgaagctctatcattgaaagtttcagactttttcaactccctttcagcccaagcaacaggatcatcatcaccactacc |
29002268 |
T |
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| Q |
376 |
aaaacc |
381 |
Q |
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|||||| |
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| T |
29002267 |
aaaacc |
29002262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 29002619 - 29002550
Alignment:
| Q |
50 |
atacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatccttgcagagaatcaatttt |
123 |
Q |
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||||||| ||||||||||||||||| |||| |||||||||| || || |||||||||| ||||||||||| |
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| T |
29002619 |
atacaaacttatgaatatgttcaaatcatgtacctccaagtggtt----aaaatccttgcagtgaatcaatttt |
29002550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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