View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6321_low_7 (Length: 397)
Name: NF6321_low_7
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 19115907 - 19116275
Alignment:
| Q |
9 |
agcacagaccttattcataacattggttttctgaggaatatttctgtcagcatgctcaagagtatatctcaacattccaattatggcagattcagtcact |
108 |
Q |
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| T |
19115907 |
agcacagaccttattcataacattggttttctgaggaatattattgtcagcatgctcaagagtatatctcaacattccaattatggcagattcagtcact |
19116006 |
T |
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| Q |
109 |
agatcatcacattctgtagtataatcaagaaattgttaaatttatattaatttaatggaatattcaatgaaagggatggtgacataagttgaaaggttac |
208 |
Q |
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| T |
19116007 |
agatcatcacattctgtagtataattaagaaattgttaaatttatattaatttaatggaatattcaatgaaagggatggtgacataagttgaaaggttac |
19116106 |
T |
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| Q |
209 |
ctgggatatcaaagatttgctttgttggcggaattcccaatacctcccccaaatatacacggacacgagcacggtcagagagtgacagaagatcgccatg |
308 |
Q |
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| T |
19116107 |
ctgggatgtcaaagatttgctttgttggtggaattcccaatacctcccccaaatatacacggacacgagcacggtcagagagtgacagaagatcgccatg |
19116206 |
T |
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| Q |
309 |
agttaaaacaagtacaggtttgtcatctgcaagcaacaggaataatctatcagattgataactattacg |
377 |
Q |
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| T |
19116207 |
agttaaaacaagtacaggtttgtcatctgcaagcaataggaataatctatcagattgataactattacg |
19116275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 19108867 - 19109234
Alignment:
| Q |
16 |
accttattcataacattggttttctgaggaatatttctgtcagcatgctcaagagtatatctcaacattccaattatggcagattcagtcactagatcat |
115 |
Q |
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| T |
19108867 |
accttattcataacattgcttttctgaggaaaatttccatcagcatgctcaagagtatatcttaacattccaactatagcagattcagtcactaggtcat |
19108966 |
T |
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| Q |
116 |
cacattctgtagtataatcaagaaattgttaaatttatattaatttaatg--------gaatattcaatgaaagggatggtgacataagttgaaaggtta |
207 |
Q |
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| T |
19108967 |
cacagtctgaaggataattaagaaattgttaaatttatattaacttaatgacataaaagaatgttcaatgaaagggatggtggcataagttcaaaggcca |
19109066 |
T |
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| Q |
208 |
cctgggatatcaaagatttgctttgttggcggaattcccaatacctcccccaaatatacacggacacgagcacggtcagagagtgacagaagatcgccat |
307 |
Q |
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| T |
19109067 |
cctgggatgtcaaaaatttgctttgttggtggaattcccaataactcccccaaataggcacggacacgagcacggtcagagagtgataggagatcgccgt |
19109166 |
T |
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| Q |
308 |
gagttaaaacaagtacaggtttgtcatctgcaagcaacaggaataatctatcagattgataactatta |
375 |
Q |
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| T |
19109167 |
gagttaaaacaagtacaggtttgtcatctgcaagcaataaaaataaactatcagattgacaactatta |
19109234 |
T |
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