View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6321_low_8 (Length: 395)
Name: NF6321_low_8
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Complemental strand, 3104067 - 3103700
Alignment:
| Q |
11 |
catagggcaaaacaaagagaagatgaatggtggtacaactccagctgcaatcatgaaaatcaacggtggaagaaggatcatctgtggccgtccgattccg |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3104067 |
catagagcaaaacaaagagaagatgaatggtggtacaactccagctgcaatcatgaaaatcaacggtggaagaaggatcatctgtggccgtccgattccg |
3103968 |
T |
|
| Q |
111 |
aggcggggtcaggggaagcttggaattgtgttgggattagccaactcagttgtttgcatcttcaccacatcatgtgctgcaccttctcatctcacacatt |
210 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3103967 |
aggcggggtcaggtgaagcttggaattgtgttgggattagccaactcagttgtttgcatcttcaccacatcatgtgctgcaccttctcatctcacacatt |
3103868 |
T |
|
| Q |
211 |
aagcataatgtaactagattagcaatagcataattagttctgtagtccaatcaaatttccttgaggaattttatctttcatttctcaaactcatagaggt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3103867 |
aagcataatgtaactagattagcaatagcataattagttctgtagtccaatcaaatttccttgaggaattttatctttcatttctcaaactcatagaggt |
3103768 |
T |
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| Q |
311 |
tacaaattgatacattttttcttctaaagttcttaactctcaacaaatatgaatacaaatataacaaac |
379 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3103767 |
tacaaattgatacat-ttttcttctaaagttcttaactctcaacaaatatgaatacaaatataacaaac |
3103700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 37577794 - 37577956
Alignment:
| Q |
18 |
caaaacaaagagaagatgaatggtggtacaactccagctgcaatcatgaaaatcaacggtggaa------gaaggatcatctgtggccgtccgattccga |
111 |
Q |
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|||| ||||||||||||| | |||| ||||||| || |||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| | |
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| T |
37577794 |
caaagcaaagagaagatggagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaa |
37577893 |
T |
|
| Q |
112 |
ggcggggtcaggggaagcttggaattgtgttgggattagccaactcagttgtttgcatcttca |
174 |
Q |
| |
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||| ||||||| || | ||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
37577894 |
agcgcggtcaggtgatggttggaattgtgttgggattggccaactcggttgtttgcatcttca |
37577956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 37585053 - 37585215
Alignment:
| Q |
18 |
caaaacaaagagaagatgaatggtggtacaactccagctgcaatcatgaaaatcaacggtggaa------gaaggatcatctgtggccgtccgattccga |
111 |
Q |
| |
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|||| ||||||||||||| | |||| ||||||| || |||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| | |
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| T |
37585053 |
caaagcaaagagaagatggagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaa |
37585152 |
T |
|
| Q |
112 |
ggcggggtcaggggaagcttggaattgtgttgggattagccaactcagttgtttgcatcttca |
174 |
Q |
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||| ||||||| || | ||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
37585153 |
agcgcggtcaggtgatggttggaattgtgttgggattggccaactcggttgtttgcatcttca |
37585215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 37583928 - 37584079
Alignment:
| Q |
29 |
gaagatgaatggtggtacaactccagctgcaatcatgaaaatcaacggtggaa------gaaggatcatctgtggccgtccgattccgaggcggggtcag |
122 |
Q |
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||||||| | |||| ||||||| || |||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| | ||| |||||| |
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| T |
37583928 |
gaagatggagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtgatcgtccgattccaaagcgcggtcag |
37584027 |
T |
|
| Q |
123 |
gggaagcttggaattgtgttgggattagccaactcagttgtttgcatcttca |
174 |
Q |
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| || | ||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
37584028 |
gtgatggttggaattgtgttgggattggccaactcggttgtttgcatcttca |
37584079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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