View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6321_low_9 (Length: 363)
Name: NF6321_low_9
Description: NF6321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6321_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 33096599 - 33096938
Alignment:
| Q |
18 |
aaatatgcttttatatgaagtactatggttgctaaactttttatatgatt---ctagtaattttagaatactttcatcactagcaatgctatttggtaga |
114 |
Q |
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| T |
33096599 |
aaatatgcttttatatgaagtactatggttgctaaactttttatatgattattctagtcattttagaatactttcatcactagcaatgctatttggtaga |
33096698 |
T |
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| Q |
115 |
aatattgacatcgagatctttattagtagtgttaagggaatggaaatattactggctgcattttaattataacatgcctttgtgtatctcatattgtttt |
214 |
Q |
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| T |
33096699 |
aatattgacatcgagatctttattagtagtgttaagggaatggaaatattactggctgcattttaattataacatgcctttgtgtatctcatattgtttt |
33096798 |
T |
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| Q |
215 |
aaactttatggcatacatgccaacaattctagtagatacacacataacacgtttaaaattttatcacctcttgaattgtatcacttattaaagaaatcaa |
314 |
Q |
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| T |
33096799 |
aaactttat-gcatacatgccaacaattctagtagatacacacataacacatttaaaattttatcacctcttgaattgtatcacttattaaagaaatcaa |
33096897 |
T |
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| Q |
315 |
tttaattttatgccaaggtttcattgttttttcttcttctc |
355 |
Q |
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| T |
33096898 |
tgtaattttatgccaaggtttcattgttttttcttcttctc |
33096938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 40743164 - 40743220
Alignment:
| Q |
119 |
ttgacatcgagatctttattagtagtgttaagggaatggaaatattactggctgcat |
175 |
Q |
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| T |
40743164 |
ttgacatggagatctttattagttgtgtcaagggaatggaaatattactggctgcat |
40743220 |
T |
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