View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6322_high_2 (Length: 377)
Name: NF6322_high_2
Description: NF6322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6322_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 9846097 - 9846449
Alignment:
| Q |
19 |
tgtcaaaccaagctgcacatgggtcatttttacaaatccagagtgcttcacgaaattcaaatttaccaataaagtaataagaatataggtggaattttcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9846097 |
tgtcaaaccaagctgcacatgggtcatttttacaaatccagagtgcttcacgaaattcaaatttaccaataaagtaataagaatataggtggaattttcc |
9846196 |
T |
|
| Q |
119 |
ccaccttctaacatgacttcggatgtacacattcggnnnnnnncataaattttgtgtagtccagaagtacactttctgacaaaatatgtcgatcagatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9846197 |
ccaccttctaacatgacttcggatgtacacattcggaaaaaaacataaattttgtgtagtccagaagtacactttctgacaaaatatgtcgatcagatgt |
9846296 |
T |
|
| Q |
219 |
acacttccagaaacatgtgtagatttttagaaatgtgggggattggggaaggtccttcctgacatcagctttgaaatgtttttaagtggcatttgttgca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9846297 |
acacttccagaaacatgtgtagatttttagaaatgtgggggattggggaaggtccttcctgacatcagctttgaaatgtttttaagtggcatttgttgca |
9846396 |
T |
|
| Q |
319 |
caaaagtaaaagataaaacattttgaatcttttggtgactctacttccttttc |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9846397 |
caaaagtaaaagataaaacattttgaatcttttggtgactctacttccttttc |
9846449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 9835219 - 9835571
Alignment:
| Q |
19 |
tgtcaaaccaagctgcacatgggtcatttttacaaa-tccagagtgcttcacgaaattcaaatttaccaataaagtaataagaatataggtggaattttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9835219 |
tgtcaaaccaagctgcacatgggtcatttttacaaaatccagagtgcttcacgaaattcaaatttaccaataaagtaataagaatataggtggaattttc |
9835318 |
T |
|
| Q |
118 |
cccaccttctaacatgacttcggatgtacacattcggnnnnnnncataaattttgtgtagtccagaagtacactttctgacaaaatatgtcgatcagatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9835319 |
cccaccttctaacatgacttcggatgtacacattcggaaaaaaacataaattttgtgtagtccagaagtacactttctgacaaaatatgtcgatcagatg |
9835418 |
T |
|
| Q |
218 |
tacacttccagaaacatgtgtagatttttagaaatgtgggggattggggaaggtccttcctgacatcagctttgaaatgtttttaagtggcatttgttgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9835419 |
tacacttccagaaacatgtgtagatttttagaaatgtgggggattggggaaggtccttcctgacatcagctttgaaatgtttttaagtgacatttgttgc |
9835518 |
T |
|
| Q |
318 |
acaaaagtaaaagataaaacattttgaatcttttggtgactctacttccttttc |
371 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9835519 |
acaaaagtaaaagataaaaca-tttgaatcttttggtgactctacttccttttc |
9835571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University