View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6322_high_7 (Length: 250)

Name: NF6322_high_7
Description: NF6322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6322_high_7
NF6322_high_7
[»] chr8 (7 HSPs)
chr8 (3-240)||(39047236-39047478)
chr8 (51-160)||(5076263-5076372)
chr8 (50-160)||(4412597-4412707)
chr8 (82-159)||(37226988-37227065)
chr8 (47-100)||(5015426-5015479)
chr8 (5-46)||(9512454-9512495)
chr8 (124-161)||(35161494-35161531)
[»] chr1 (12 HSPs)
chr1 (50-161)||(1181497-1181608)
chr1 (47-161)||(16313900-16314014)
chr1 (47-160)||(7014985-7015098)
chr1 (46-144)||(43514353-43514451)
chr1 (82-161)||(12068014-12068093)
chr1 (65-152)||(9355411-9355498)
chr1 (51-161)||(49000783-49000893)
chr1 (50-160)||(33296425-33296535)
chr1 (95-152)||(16315368-16315425)
chr1 (79-151)||(25901345-25901417)
chr1 (79-160)||(25901396-25901477)
chr1 (51-140)||(44490679-44490768)
[»] chr5 (7 HSPs)
chr5 (50-160)||(12143809-12143919)
chr5 (47-160)||(29195198-29195311)
chr5 (47-161)||(35048688-35048801)
chr5 (47-160)||(2743853-2743966)
chr5 (56-152)||(20882908-20883004)
chr5 (50-161)||(13275031-13275142)
chr5 (47-99)||(40018105-40018157)
[»] chr4 (14 HSPs)
chr4 (50-152)||(22923321-22923423)
chr4 (50-152)||(22927974-22928076)
chr4 (50-152)||(22984253-22984355)
chr4 (50-152)||(22997841-22997943)
chr4 (47-161)||(54185607-54185721)
chr4 (48-160)||(12657194-12657308)
chr4 (47-161)||(45864951-45865065)
chr4 (47-160)||(1939365-1939478)
chr4 (50-147)||(32304853-32304950)
chr4 (71-160)||(50333980-50334069)
chr4 (50-161)||(49285492-49285603)
chr4 (48-161)||(41420632-41420743)
chr4 (47-139)||(156058-156150)
chr4 (47-94)||(21283799-21283846)
[»] chr6 (4 HSPs)
chr6 (56-161)||(1031791-1031896)
chr6 (50-161)||(7527068-7527179)
chr6 (47-161)||(35018739-35018853)
chr6 (46-94)||(4410234-4410282)
[»] chr2 (4 HSPs)
chr2 (47-161)||(19380219-19380333)
chr2 (47-161)||(5848090-5848204)
chr2 (50-152)||(11816083-11816185)
chr2 (56-99)||(187267-187310)
[»] chr7 (3 HSPs)
chr7 (47-160)||(44226520-44226633)
chr7 (49-152)||(432933-433036)
chr7 (50-160)||(23943729-23943839)
[»] chr3 (6 HSPs)
chr3 (50-161)||(46637060-46637171)
chr3 (49-161)||(46182936-46183048)
chr3 (47-99)||(30842114-30842166)
chr3 (46-100)||(20513508-20513562)
chr3 (50-161)||(34436977-34437088)
chr3 (47-139)||(53772300-53772392)
[»] scaffold0001 (1 HSPs)
scaffold0001 (47-99)||(185436-185488)
[»] scaffold0010 (1 HSPs)
scaffold0010 (49-99)||(28599-28649)
[»] scaffold0015 (1 HSPs)
scaffold0015 (50-94)||(33592-33636)


Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 39047236 - 39047478
Alignment:
Q  3 cggcgttcgttaagtaatacagagtttaacacttgcgttactta-------cagcgttaattaactaacgcatagtttttcaattgcgttagttaactag 95  Q
    |||| |||||||||||| |||||||||||||||||||||| |||       |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  39047236 cggcattcgttaagtaacacagagtttaacacttgcgttatttaacctgcgcagcgttagttaactaacgcatagtttttcacttgcgttagttaactag 39047335  T
Q  96 cgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattctnnnnnnnnnntatgtaatgtaatcctttctcaat 195  Q
    ||||| |||||||||||||||| |||| |||||||  |||||||| ||||||||||  ||||||||          ||||| ||||||| ||||||||||    
T  39047336 cgcaaggataaatttaaaacgattgtagggcgcgaataaaatgtgttgggtggagaacagaattct--aaaaaaaatatgt-atgtaat-ctttctcaat 39047431  T
Q  196 agtgaaaag--caccatagagtgatcttttggaagtccacacctatg 240  Q
    |||||||||  ||||||| ||||||||||||||||||||||||||||    
T  39047432 agtgaaaagcacaccatacagtgatcttttggaagtccacacctatg 39047478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 5076263 - 5076372
Alignment:
Q  51 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggag 150  Q
    |||| ||||||| ||||||||||| || |||||||||||||||| ||||||| ||||||| ||||| ||| ||||||||||||| |||||| ||||||||    
T  5076263 gttagttaactagcgcatagttttacatttgcgttagttaactaacgcaatggtaaatttgaaacggctgcaaggcgcgagcaacatgtgcagggtggag 5076362  T
Q  151 agtagaattc 160  Q
    || |||||||    
T  5076363 agcagaattc 5076372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 4412707 - 4412597
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| |||| || ||||||||||| || |||||| |||||| |||||||| | |||||||  |||| ||| | |||||||||||||||||||||||  |    
T  4412707 cgttagttaattagcgcatagttttacacttgcgtgagttaattagcgcaaaggtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggtaaa 4412608  T
Q  150 gagtagaattc 160  Q
    ||| |||||||    
T  4412607 gagcagaattc 4412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 37227065 - 37226988
Alignment:
Q  82 cgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaatt 159  Q
    ||||||||||||||| ||| | |||||||  || | ||| | |||||||||||||||||||||||| |||| ||||||    
T  37227065 cgttagttaactagcacaaaggtaaatttggaatggctgcagggcgcgagcaaaatgtgctgggtgaagagcagaatt 37226988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 5015479 - 5015426
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 100  Q
    |||||||| ||||||| ||||||||||| ||  ||||||||||||||| |||||    
T  5015479 cagcgttagttaactagcgcatagttttacacgtgcgttagttaactaacgcaa 5015426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 9512454 - 9512495
Alignment:
Q  5 gcgttcgttaagtaatacagagtttaacacttgcgttactta 46  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||    
T  9512454 gcgttagttaaataacacagagtttaacacttgcgttactta 9512495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 35161531 - 35161494
Alignment:
Q  124 ggcgcgagcaaaatgtgctgggtggagagtagaattct 161  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  35161531 ggcgcgagcaaaatgtgcagggtgaagagtagaattct 35161494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 1181497 - 1181608
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||| ||||||| | ||||||||||||||||||||||||    
T  1181497 cgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaaagactgtaggacgcgagcaaaatgtgctgggtgga 1181596  T
Q  150 gagtagaattct 161  Q
    ||| ||||||||    
T  1181597 gagcagaattct 1181608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 16314014 - 16313900
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||| ||| | | |||||||||||||||||||||    
T  16314014 cagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcatgacgcgagcaaaatgtgctgggt 16313915  T
Q  147 ggagagtagaattct 161  Q
    |||||| | ||||||    
T  16313914 ggagagcataattct 16313900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 7014985 - 7015098
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | |||||||||||||||||||||||    
T  7014985 cagcgttagttaactaacgcgtagtttttcacttgcgttagttaactagcgcaagggtaaatttcgaacggctgcagggcgcgagcaaaatgtgctgggt 7015084  T
Q  147 ggagagtagaattc 160  Q
    |||||| |||||||    
T  7015085 ggagagcagaattc 7015098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 43514451 - 43514353
Alignment:
Q  46 acagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgg 144  Q
    |||| |||| |||||||  |||||||||| || |||||||||||||||| ||||| | ||||||||||||| ||| | | |||||||||||||||||||    
T  43514451 acagtgttacttaactagtgcatagttttacacttgcgttagttaactaacgcaagggtaaatttaaaacggctgcaggacgcgagcaaaatgtgctgg 43514353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 12068014 - 12068093
Alignment:
Q  82 cgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattct 161  Q
    ||||||||||||| ||||| |||||||||  |||| ||| | ||||||||||||||||||||||||||||| | ||||||    
T  12068014 cgttagttaactaacgcaaggataaatttggaacggctgcagggcgcgagcaaaatgtgctgggtggagagcataattct 12068093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 9355411 - 9355498
Alignment:
Q  65 gcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 152  Q
    |||||||||| || |||||||||||||||||||||| | |||| |||||||    | | |||||||||||||||||| ||||||||||    
T  9355411 gcatagttttacacttgcgttagttaactagcgcaagggtaaacttaaaacaggcgcagggcgcgagcaaaatgtgcagggtggagag 9355498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 49000783 - 49000893
Alignment:
Q  51 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggag 150  Q
    |||| ||||||| ||||||  ||| || |||||| |||||||||| |||| | |||||||| |||| ||  | |||||||||||||||||||||||| ||    
T  49000783 gttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttagaacggctacagggcgcgagcaaaatgtgctgggtgaag 49000882  T
Q  151 agtagaattct 161  Q
    || | ||||||    
T  49000883 agcaaaattct 49000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 33296535 - 33296425
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||| ||||||  ||| || |||||| ||||||||| ||||| | |||||||  |||   |||| ||||||||||||||||||||| || |    
T  33296535 cgttagttaactagcgcatacatttacacttgcgtgagttaactaacgcaagggtaaatttggaacagatgtagggcgcgagcaaaatgtgctggatgaa 33296436  T
Q  150 gagtagaattc 160  Q
    ||| |||||||    
T  33296435 gagcagaattc 33296425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 16315368 - 16315425
Alignment:
Q  95 gcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 152  Q
    |||||| |||||||||  |||| ||||| |||||||||||||||||| ||||||||||    
T  16315368 gcgcaaggataaatttggaacggctgtagggcgcgagcaaaatgtgcagggtggagag 16315425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 25901417 - 25901345
Alignment:
Q  79 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggaga 151  Q
    ||||| |||||||||| ||||| | |||||||   ||| || || ||||||||||||||||||||||||||||    
T  25901417 ttgcgctagttaactaacgcaagggtaaatttggtacggctatagggcgcgagcaaaatgtgctgggtggaga 25901345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 25901396 - 25901477
Alignment:
Q  79 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 160  Q
    |||||||||||||||||||||| | | |||||   ||||||| | | || ||||||||||| || ||||||||| |||||||    
T  25901396 ttgcgttagttaactagcgcaaaggtgaatttggtacgactgcaggacgtgagcaaaatgtacttggtggagagcagaattc 25901477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 44490679 - 44490768
Alignment:
Q  51 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtg 140  Q
    |||| ||||||| ||||||  ||| || |||||| |||||||||| |||| | |||||||  |||| ||| | |||||||||||||||||    
T  44490679 gttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttggaacggctgcagggcgcgagcaaaatgtg 44490768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 12143919 - 12143809
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||| |||| ||| | ||||||||||||||||||| ||||||    
T  12143919 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaaaggtaaatttagaacggctgcagggcgcgagcaaaatgtgctaggtgga 12143820  T
Q  150 gagtagaattc 160  Q
    ||| |||||||    
T  12143819 gagcagaattc 12143809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 29195311 - 29195198
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||||||  |||| | | | || ||||||||||| ||||||||    
T  29195311 cagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggccgcagggagcgagcaaaatatgctgggt 29195212  T
Q  147 ggagagtagaattc 160  Q
    |||||| |||||||    
T  29195211 ggagagcagaattc 29195198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 35048801 - 35048688
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| ||||||||||||| |||||||| |||||||| ||||||| ||||| | ||||||| ||||| ||| | || ||||||||||||||||||||    
T  35048801 cagcgttagttaactaacgcat-gtttttcacttgcgttaattaactaacgcaagggtaaatttgaaacggctgcagggagcgagcaaaatgtgctgggt 35048703  T
Q  147 ggagagtagaattct 161  Q
    |||||| ||||||||    
T  35048702 ggagagcagaattct 35048688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 2743853 - 2743966
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| ||||||| ||||||  ||| || || ||| ||||||||||||||| |||||||||  |||| ||| ||||| |||||||||||||||||||    
T  2743853 cagcgttagttaactagcgcatacatttacacttacgtgagttaactagcgcaaggataaatttggaacggctgcaaggcacgagcaaaatgtgctgggt 2743952  T
Q  147 ggagagtagaattc 160  Q
    | |||| |||||||    
T  2743953 gaagagcagaattc 2743966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 20883004 - 20882908
Alignment:
Q  56 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 152  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | |||| |||||||||  |||||||||||||    
T  20883004 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcatggcgtgagcaaaatacgctgggtggagag 20882908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 13275031 - 13275142
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||| | ||||  ||| || |||||| ||||||||||||||||| |||||||  ||||  || | |||||||||||||||||| ||||| |    
T  13275031 cgttagttaactagcacatacatttacacttgcgtgagttaactagcgcaatggtaaattttgaacggttgcagggcgcgagcaaaatgtgcggggtgaa 13275130  T
Q  150 gagtagaattct 161  Q
    ||| ||||||||    
T  13275131 gaggagaattct 13275142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 40018157 - 40018105
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 99  Q
    |||| ||| ||||||||||||||||||| || |||||||||||||||| ||||    
T  40018157 cagcattagttaactaacgcatagttttacacttgcgttagttaactaacgca 40018105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 22923321 - 22923423
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22923321 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22923420  T
Q  150 gag 152  Q
    |||    
T  22923421 gag 22923423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 22927974 - 22928076
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22927974 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22928073  T
Q  150 gag 152  Q
    |||    
T  22928074 gag 22928076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 22984253 - 22984355
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22984253 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22984352  T
Q  150 gag 152  Q
    |||    
T  22984353 gag 22984355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 22997841 - 22997943
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22997841 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22997940  T
Q  150 gag 152  Q
    |||    
T  22997941 gag 22997943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 54185607 - 54185721
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| ||||||| ||||||||||| || |||||||||||||||||||||| | ||||||| ||||| ||| | |||||||||||||| ||| ||||    
T  54185607 cagcgttacttaactagcgcatagttttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcagggcgcgagcaaaatatgcagggt 54185706  T
Q  147 ggagagtagaattct 161  Q
    |||||| ||||||||    
T  54185707 ggagagcagaattct 54185721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 12657194 - 12657308
Alignment:
Q  48 agcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaag--gcgcgagcaaaatgtgctggg 145  Q
    ||||||| ||||||||| |||||||||||| ||| |||||||||||||||||| | |||||||  |||| ||| | |  |||||||||||||||||||||    
T  12657194 agcgttagttaactaacacatagtttttcacttgtgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgcgagcaaaatgtgctggg 12657293  T
Q  146 tggagagtagaattc 160  Q
    ||||||| |||||||    
T  12657294 tggagagcagaattc 12657308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 45864951 - 45865065
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| ||||||||||||||||||| || |||| |||||||||||||||||   |||||||| ||||  || | |||||||||||||||||| ||||    
T  45864951 cagcgttacttaactaacgcatagttttacacttgcattagttaactagcgcaagagtaaatttagaacggttgcagggcgcgagcaaaatgtgcagggt 45865050  T
Q  147 ggagagtagaattct 161  Q
    ||| || ||||||||    
T  45865051 ggatagcagaattct 45865065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 1939365 - 1939478
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| ||||||| |||||   ||| || ||||||||||||||||||| || |||||||||  |||| ||| | |||||||||||||||||||||||    
T  1939365 cagcgttagttaactagcgcatgcatttacacttgcgttagttaactagcgtaaggataaatttggaacggctgcagggcgcgagcaaaatgtgctgggt 1939464  T
Q  147 ggagagtagaattc 160  Q
     ||||| |||||||    
T  1939465 agagagcagaattc 1939478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 32304950 - 32304853
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtg 147  Q
    ||||| ||||||||| ||||||||| || |||||| ||||||||||||||| | |||||||| |||| ||| ||| |||||||||||||||| |||||    
T  32304950 cgttagttaactaacacatagttttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcaagacgcgagcaaaatgtgcagggtg 32304853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 50334069 - 50333980
Alignment:
Q  71 tttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 160  Q
    ||||||| |||||||||||||||||||||| | |||||||  ||||  |||| || ||||||||||||||| |||||||||| |||||||    
T  50334069 tttttcacttgcgttagttaactagcgcaagggtaaatttggaacggttgtagggtgcgagcaaaatgtgccgggtggagagcagaattc 50333980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 49285603 - 49285492
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||| ||||||||||| || |||| |||||||| ||  |||| | ||||||||||||| ||  ||| |||||||||||||||| |||||||    
T  49285603 cgttacttaactagcgcatagttttacacttgcattagttaattaatgcaagggtaaatttaaaacggctacaagccgcgagcaaaatgtgcagggtgga 49285504  T
Q  150 gagtagaattct 161  Q
     || ||||||||    
T  49285503 aagcagaattct 49285492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 41420632 - 41420743
Alignment:
Q  48 agcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtg 147  Q
    ||||||| ||||||| ||||||||||| ||  ||||||| |||||||||||||   |||||||  |||| ||| | ||||||| |||||| |||  ||||    
T  41420632 agcgttagttaactagcgcatagttttaca--tgcgttacttaactagcgcaagagtaaatttggaacggctgcatggcgcgaacaaaatatgcaaggtg 41420729  T
Q  148 gagagtagaattct 161  Q
     |||||||||||||    
T  41420730 aagagtagaattct 41420743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 156150 - 156058
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgt 139  Q
    |||||||||||||||| | |||| |||| || |||||||||||||||| || || |||| ||||  || | ||| | ||||||||||||||||    
T  156150 cagcgttaattaactagcacataattttacacttgcgttagttaactaacgtaaggatatatttggaatggctgcagggcgcgagcaaaatgt 156058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 21283846 - 21283799
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaacta 94  Q
    |||||||| ||||||||| ||||||||| || ||||||||||||||||    
T  21283846 cagcgttagttaactaacacatagttttacacttgcgttagttaacta 21283799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 1031791 - 1031896
Alignment:
Q  56 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 155  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | || |||||||||||||||||||||||||| ||    
T  1031791 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctggacggtgcgagcaaaatgtgctgggtggagagcag 1031890  T
Q  156 aattct 161  Q
    | ||||    
T  1031891 agttct 1031896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 7527068 - 7527179
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||||| |||| |||| || |||||| ||||||||||||||| | |||||||| |||| ||| | |||||||||||||||| |||| || |    
T  7527068 cgttagttaactaacacataattttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcagggcgcgagcaaaatgtactggatgaa 7527167  T
Q  150 gagtagaattct 161  Q
    ||| | ||||||    
T  7527168 gagcataattct 7527179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 35018739 - 35018853
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| |||| |||||||||||||| || |||||| |||||||||| || | | |||||||  |||| ||| | | ||||||||||||||| |||||    
T  35018739 cagcgttagttaaataacgcatagttttacacttgcgtgagttaactagtgcgagggtaaatttggaacggctgcaggacgcgagcaaaatgtgttgggt 35018838  T
Q  147 ggagagtagaattct 161  Q
    | |||| ||||||||    
T  35018839 gaagagcagaattct 35018853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 4410234 - 4410282
Alignment:
Q  46 acagcgttaattaactaacgcatagtttttcaattgcgttagttaacta 94  Q
    ||||||||| ||||||||  ||||||||| || ||||||||||||||||    
T  4410234 acagcgttagttaactaatacatagttttacacttgcgttagttaacta 4410282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 19380219 - 19380333
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| ||||||||||||||  ||| || ||||||||||||||||||||||   |||||||  |||| ||| | |||||||||||||||||||||||    
T  19380219 cagcgttagttaactaacgcatacatttacacttgcgttagttaactagcgcaagagtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggt 19380318  T
Q  147 ggagagtagaattct 161  Q
    |||||| | ||||||    
T  19380319 ggagagcaaaattct 19380333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 5848090 - 5848204
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| ||||||| ||||||||||| || || ||||||||||||||||||| | |||||||  || | |||   |||||||||||||||||| ||||    
T  5848090 cagcgttacttaactagcgcatagttttacacttacgttagttaactagcgcaagggtaaatttggaatggctgctgggcgcgagcaaaatgtgcagggt 5848189  T
Q  147 ggagagtagaattct 161  Q
    ||| || ||||||||    
T  5848190 ggatagcagaattct 5848204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 11816083 - 11816185
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| |||||||  |||||||||| || |||||| ||||||||||||||| | ||||||| ||||| ||| | ||  ||||||||||||| |||||| |    
T  11816083 cgttagttaactagtgcatagttttacacttgcgtgagttaactagcgcaagggtaaatttgaaacggctgcagggtacgagcaaaatgtgatgggtgaa 11816182  T
Q  150 gag 152  Q
    |||    
T  11816183 gag 11816185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 187267 - 187310
Alignment:
Q  56 ttaactaacgcatagtttttcaattgcgttagttaactagcgca 99  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  187267 ttaactaacgcatagttttacacttgcgttagttaactaacgca 187310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 44226520 - 44226633
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 146  Q
    |||||||| ||||||||| |||||||||||| ||||||| ||||||||| |||| | ||||||| ||||| ||  | ||| ||| |||||||||||||||    
T  44226520 cagcgttagttaactaacacatagtttttcacttgcgttggttaactagagcaagggtaaatttgaaacggctacagggcacgaacaaaatgtgctgggt 44226619  T
Q  147 ggagagtagaattc 160  Q
    |||||| |||||||    
T  44226620 ggagagcagaattc 44226633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 432933 - 433036
Alignment:
Q  49 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgg 148  Q
    |||||| |||||||||||||| |||| || |||||||||||||||||||||| | ||||||| ||||| |||   || ||||||||||||||| ||||||    
T  432933 gcgttagttaactaacgcataattttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgccgggtgcgagcaaaatgtgcagggtgg 433032  T
Q  149 agag 152  Q
    ||||    
T  433033 agag 433036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 23943729 - 23943839
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||| ||||||||||| ||  ||||||||||||||| ||||| | || ||||| |||| ||| |  ||||||||||||||||| ||||| |    
T  23943729 cgttagttaactagcgcatagttttacacctgcgttagttaactaacgcaagggtatatttagaacggctgcagagcgcgagcaaaatgtgcagggtgaa 23943828  T
Q  150 gagtagaattc 160  Q
    ||| |||||||    
T  23943829 gagcagaattc 23943839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 46637060 - 46637171
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||| ||||||||||| || ||||||||||||||||||| || |||||||||  |||| ||| | |||||||||||||||||| || ||||    
T  46637060 cgttacttaactagcgcatagttttacatttgcgttagttaactagcgtaaggataaatttggaacggctgcatggcgcgagcaaaatgtgcaggatgga 46637159  T
Q  150 gagtagaattct 161  Q
    ||| | ||||||    
T  46637160 gagcataattct 46637171  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 46183048 - 46182936
Alignment:
Q  49 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgg 148  Q
    |||||| |||||||||||||| |||| || |||||||| ||||||||||||| | ||||||| ||||| ||| | || | |||||||||||||  |||||    
T  46183048 gcgttagttaactaacgcataattttacacttgcgttatttaactagcgcaagggtaaatttgaaacggctgcagggtgtgagcaaaatgtgcaaggtgg 46182949  T
Q  149 agagtagaattct 161  Q
    |||| ||||||||    
T  46182948 agagcagaattct 46182936  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 30842114 - 30842166
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 99  Q
    |||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||    
T  30842114 cagcgttagttaactaacgcataggtttacaattacgttagttaactagcgca 30842166  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 20513562 - 20513508
Alignment:
Q  46 acagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 100  Q
    ||||||||| ||||||| ||||||||||| || |||||||||||||||| |||||    
T  20513562 acagcgttagttaactatcgcatagttttacacttgcgttagttaactaacgcaa 20513508  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 34437088 - 34436977
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 149  Q
    ||||| ||||||| ||||||  ||| || |||||| |||||||||||| || | |||||||  |||| ||| | | ||||||||||||||||| | || |    
T  34437088 cgttagttaactagcgcatacatttacacttgcgtgagttaactagcgtaagggtaaatttggaacggctgcaggacgcgagcaaaatgtgcttgatgaa 34436989  T
Q  150 gagtagaattct 161  Q
    ||| ||||||||    
T  34436988 gagcagaattct 34436977  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 53772300 - 53772392
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgt 139  Q
    |||||||||||||||||| |||| ||||||| || ||||| |||||| || ||| | |||||||  |||  ||| | | ||||||||||||||    
T  53772300 cagcgttaattaactaacacataatttttcacttacgttaattaacttgcacaagggtaaattttgaacagctgcaggacgcgagcaaaatgt 53772392  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 185488 - 185436
Alignment:
Q  47 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 99  Q
    |||||||| ||||||||||||||||||| || |||||||||||||||| ||||    
T  185488 cagcgttagttaactaacgcatagttttacacttgcgttagttaactaacgca 185436  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 28649 - 28599
Alignment:
Q  49 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 99  Q
    |||||| |||||||||||||| |||| || |||||||||||||||| ||||    
T  28649 gcgttagttaactaacgcataattttacacttgcgttagttaactaacgca 28599  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 33592 - 33636
Alignment:
Q  50 cgttaattaactaacgcatagtttttcaattgcgttagttaacta 94  Q
    ||||| ||||||||||||| ||||| || ||||||||||||||||    
T  33592 cgttagttaactaacgcattgttttacacttgcgttagttaacta 33636  T

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