View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6322_low_10 (Length: 238)
Name: NF6322_low_10
Description: NF6322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6322_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 26973628 - 26973414
Alignment:
| Q |
4 |
gagacaaatcccaaaagcaattaaactagctacaaagtaatcacatctttttagtcaaaaataaagcaaatacatctcaaaacgaacccttttcgttctc |
103 |
Q |
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| T |
26973628 |
gagacaaatcccaaaagcaattaaaccagctacaaaataatcacatctttttagtcaaaaataaagcaaacacatctcaaaacgaacccctttcgttctc |
26973529 |
T |
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| Q |
104 |
ccccaagcaaattatttcttcttaaaattcatgctccatctattgttgtgttcttgtacnnnnnnngatggttgctgtgttgaaatattgagcctgactt |
203 |
Q |
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| T |
26973528 |
ccccaagcaaattatttcttcttaaaattcatgctctatcggttgatgtgttcttgttcaaaaaaagatggttgctgtgttgaaatattgagcgtgactt |
26973429 |
T |
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| Q |
204 |
aagtcacgttggtta |
218 |
Q |
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| T |
26973428 |
aagtcacgttggtta |
26973414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 39046866 - 39046712
Alignment:
| Q |
1 |
ttagagacaaatcccaaaagcaattaaactagctacaaagtaatcacatctttttagtcaaaaataaagcaaatacatctcaaaacgaacccttttcgtt |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39046866 |
ttagagacaaatcccaaaagcaattaaaccagctacaaagtaatcacatctttttagtcaaaaataaagcaaacacatctcaaaacgaacccttttcgtt |
39046767 |
T |
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| Q |
101 |
ctcccccaagcaaattatttcttcttaaaattcatgctccatctattgttgtgtt |
155 |
Q |
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| T |
39046766 |
ctcccccaagcaaattatttcttcttaaaattcatgctctatctattgttgtgtt |
39046712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 33728675 - 33728636
Alignment:
| Q |
179 |
tgtgttgaaatattgagcctgacttaagtcacgttggtta |
218 |
Q |
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| T |
33728675 |
tgtgttgaaatattgagcgtgacttaagtcacgttggtta |
33728636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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