View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6322_low_11 (Length: 232)
Name: NF6322_low_11
Description: NF6322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6322_low_11 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 46959176 - 46959403
Alignment:
| Q |
5 |
tgtcgaagaaaatcactacttgttgaaaaacaagcgggaggattcacccagccttgagaagaagtagaaccatgagcttgccaacagtaagatcttctat |
104 |
Q |
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| T |
46959176 |
tgtcgaatcaaatcactacttgttgaaaaacaagcgggaggattcacacagccttgagaagaagtagaaccatgagcttgccaacagtaagatcttctat |
46959275 |
T |
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| Q |
105 |
tttctccaaagtatgatggaagataaatattttcgagatatagtccttcacatggataggtatcactgcaggcaaatttaatggtttctttggaggccga |
204 |
Q |
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| T |
46959276 |
tttctccaaagtatgatggaagataaatattttcgagatgtagtccttcacatggataggtatcactgcaggcaaatttaatggtttcttcggaggccga |
46959375 |
T |
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| Q |
205 |
agttcctataatattaatgaaggatatg |
232 |
Q |
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| T |
46959376 |
agttcctataatattaatgaaggatatg |
46959403 |
T |
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Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 44522878 - 44522716
Alignment:
| Q |
70 |
agaaccatgagcttgccaacagtaagatcttctattttctccaaagtatgatggaagataaatattttcgagatatagtccttcacatggataggtatca |
169 |
Q |
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||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||| |||||||||| |||||||||||||| |||||| | | |||| |
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| T |
44522878 |
agaaccatgagcttgccaacaataagatcttgtatttcctccaaagtatgatcgaagaaaaatattttccagatatagtccttcgcatggagaagcatca |
44522779 |
T |
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| Q |
170 |
ctgcaggcaaatttaatggtttctttggaggccgaagttcctataatattaatgaaggatatg |
232 |
Q |
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| T |
44522778 |
ctgcaggcaaatttaatggtttcttcggtggccgaagttccttgaatattaatgaaggatatg |
44522716 |
T |
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