View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6322_low_2 (Length: 429)

Name: NF6322_low_2
Description: NF6322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6322_low_2
NF6322_low_2
[»] chr7 (3 HSPs)
chr7 (272-413)||(40454122-40454263)
chr7 (10-105)||(40454360-40454455)
chr7 (119-173)||(40454263-40454317)
[»] chr1 (5 HSPs)
chr1 (249-301)||(15904750-15904801)
chr1 (224-255)||(26093452-26093483)
chr1 (205-251)||(22181398-22181444)
chr1 (206-255)||(29074942-29074991)
chr1 (207-251)||(2572530-2572574)
[»] chr8 (1 HSPs)
chr8 (224-255)||(41092052-41092083)
[»] chr4 (2 HSPs)
chr4 (224-255)||(8175612-8175643)
chr4 (224-255)||(54506846-54506877)
[»] chr2 (2 HSPs)
chr2 (224-255)||(37322486-37322517)
chr2 (224-277)||(3323310-3323363)
[»] chr5 (1 HSPs)
chr5 (205-251)||(15439324-15439370)
[»] chr3 (2 HSPs)
chr3 (205-251)||(52206854-52206900)
chr3 (206-251)||(3901157-3901202)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 272 - 413
Target Start/End: Complemental strand, 40454263 - 40454122
Alignment:
Q  272 tgttaaagtgaagtgaaattcaataaatatgagtatatgacatgaatgttacatatatatccaaccaaacaccatggtttagatggttgtaatagctagg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40454263 tgttaaagtgaagtgaaattcaataaatatgagtatatgacatgaatgttacatatatatccaaccaaacaccatggtttagatggttgtaatagctagg 40454164  T
Q  372 tggatgattaacatgaattttaattactggttttcaagaaag 413  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40454163 tggatgattaacatgaattttaattactggttttcaagaaag 40454122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 40454455 - 40454360
Alignment:
Q  10 acatcatcaacaactgtaaccttcttggctgcaaagtctatgttgaaggacgtaacccctgcccattttattaccaatacaaaaataattatggaa 105  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40454455 acatcaccaactactgtaaccttcttggctgcaaagtctatgttgaaggacgtaacccctgcccattttattaccaatacaaaaataattatggaa 40454360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 40454317 - 40454263
Alignment:
Q  119 atcaatcaataaaacgtgaccataaacatgtttatttcattttgagaaattccgt 173  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||| ||||    
T  40454317 atcaagcaataaaacgtgaccataaacatggttgtttcattttgagaaatcccgt 40454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 15904801 - 15904750
Alignment:
Q  249 ttattaattatatttagtgaagttgttaaagtgaagtgaaattcaataaatat 301  Q
    ||||||||| || |||||||||| ||||| |||||||||||||||||||||||    
T  15904801 ttattaattgtagttagtgaagtagttaa-gtgaagtgaaattcaataaatat 15904750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 26093483 - 26093452
Alignment:
Q  224 atttcaatggtaaaattaatatcatttattaa 255  Q
    ||||||||||||||||||||||||||||||||    
T  26093483 atttcaatggtaaaattaatatcatttattaa 26093452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 22181444 - 22181398
Alignment:
Q  205 gaaatgattagttggactaatttcaatggtaaaattaatatcattta 251  Q
    ||||||||||||||   | ||||||||||||||||||||||||||||    
T  22181444 gaaatgattagttgagttcatttcaatggtaaaattaatatcattta 22181398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 29074991 - 29074942
Alignment:
Q  206 aaatgattagttggactaatttcaatggtaaaattaatatcatttattaa 255  Q
    |||||||||||||   | |||| |||||||||||||||||||||||||||    
T  29074991 aaatgattagttgtgttgattttaatggtaaaattaatatcatttattaa 29074942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 2572574 - 2572530
Alignment:
Q  207 aatgattagttggactaatttcaatggtaaaattaatatcattta 251  Q
    |||||||| ||| | | ||||||||||||||||||||||||||||    
T  2572574 aatgattaattgtattgatttcaatggtaaaattaatatcattta 2572530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 41092083 - 41092052
Alignment:
Q  224 atttcaatggtaaaattaatatcatttattaa 255  Q
    ||||||||||||||||||||||||||||||||    
T  41092083 atttcaatggtaaaattaatatcatttattaa 41092052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 8175612 - 8175643
Alignment:
Q  224 atttcaatggtaaaattaatatcatttattaa 255  Q
    ||||||||||||||||||||||||||||||||    
T  8175612 atttcaatggtaaaattaatatcatttattaa 8175643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 54506877 - 54506846
Alignment:
Q  224 atttcaatggtaaaattaatatcatttattaa 255  Q
    ||||||||||||||||||||||||||||||||    
T  54506877 atttcaatggtaaaattaatatcatttattaa 54506846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 37322517 - 37322486
Alignment:
Q  224 atttcaatggtaaaattaatatcatttattaa 255  Q
    ||||||||||||||||||||||||||||||||    
T  37322517 atttcaatggtaaaattaatatcatttattaa 37322486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 3323310 - 3323363
Alignment:
Q  224 atttcaatggtaaaattaatatcatttattaattatatttagtgaagttgttaa 277  Q
    |||||||||||||||||| || |||||||||||| || |||||| ||| |||||    
T  3323310 atttcaatggtaaaattagtaacatttattaattgtagttagtggagtagttaa 3323363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 15439324 - 15439370
Alignment:
Q  205 gaaatgattagttggactaatttcaatggtaaaattaatatcattta 251  Q
    |||||||||| ||| | |||||||||||||||||||| |||||||||    
T  15439324 gaaatgattaattgtattaatttcaatggtaaaattagtatcattta 15439370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 52206854 - 52206900
Alignment:
Q  205 gaaatgattagttggactaatttcaatggtaaaattaatatcattta 251  Q
    |||||||||||||  | | ||||||||||||||||||||||||||||    
T  52206854 gaaatgattagttaaattgatttcaatggtaaaattaatatcattta 52206900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 3901157 - 3901202
Alignment:
Q  206 aaatgattagttggactaatttcaatggtaaaattaatatcattta 251  Q
    ||||||||| ||| | ||||||||||| ||||||||||||||||||    
T  3901157 aaatgattaattgtattaatttcaatgataaaattaatatcattta 3901202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University