View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6323_low_3 (Length: 335)
Name: NF6323_low_3
Description: NF6323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6323_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 151 - 327
Target Start/End: Complemental strand, 22674188 - 22674012
Alignment:
| Q |
151 |
catctttaaaacgtttttaaaagtgtaattattctgctgcattctttctcaaaatttcatgagaaaatttcattgaagcaatcttcaacattttcctact |
250 |
Q |
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| T |
22674188 |
catctttaaaacgtttttaaaagtgtaattattctgctgcattctttctcaaaatttcatgagaaaatttcattgaagcaatctacaacattttcctact |
22674089 |
T |
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| Q |
251 |
ttgttttttccttgaagactcgctttttaaatccccaagaaataaatatttttatttcctttttcaatttctgatga |
327 |
Q |
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| T |
22674088 |
ttgtttcttccttgaagactccttttttaaatctccaagaaataaatattttcatttcctttttcaatttctaatga |
22674012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 22674312 - 22674270
Alignment:
| Q |
29 |
tatggtgtatttgtttattaacaaattttatgaattttagttt |
71 |
Q |
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| T |
22674312 |
tatggtatatttgtttattaacaaattttatgaattttagttt |
22674270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 37865090 - 37865136
Alignment:
| Q |
210 |
tgagaaaatttcattgaagcaatcttcaacattttcctactttgttt |
256 |
Q |
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| T |
37865090 |
tgagaaaatttcattgaagcaatcttcgacctttttccactttgttt |
37865136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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