View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6324_high_1 (Length: 923)
Name: NF6324_high_1
Description: NF6324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6324_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 346 - 913
Target Start/End: Complemental strand, 4366051 - 4365479
Alignment:
| Q |
346 |
tgattgaatgtttgttgttgtgagctgatttttattgcatacaaaatgataattagtttgcatgttgtttttaattgagtttgatgggtatgagttagtt |
445 |
Q |
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||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4366051 |
tgattgaatgtttgttgttatgagatgatttttgttgcatacaaaatgataattagtttgcatgttgtttttaattgagtttgatgggtatgagttagtt |
4365952 |
T |
|
| Q |
446 |
tataactgaaataaatcattacggagatgaacttgaagtttggttccggatatgaactttgtacatgcttaaaaagaaagaaagatacttatttagatga |
545 |
Q |
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| T |
4365951 |
tataactgaaataaatcattacggatatgaacttgaagtttggttccggatatgaactttgtacatgcttaaaaagaaagaaagatacttgtttagatga |
4365852 |
T |
|
| Q |
546 |
actagagaaagcatgaaaactactgcataaaacatgttcagtgtgtgatttttcataaattcttggaacaatatttttagacgggaccaattgcatcatg |
645 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4365851 |
actagagaaagcctgaaaactactgcacaaaacatgttcagtgtgtgatttttcataaattcttggaacaatatttttagacgggaccaattgcatcatg |
4365752 |
T |
|
| Q |
646 |
ttcatacttcataggttagctgaataccttcaataaaatctagaaaattttcagacatcgtatgactatccgtctatagtttttatcgattgcaactctg |
745 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4365751 |
ttcatacttcataggttagctgaataccttcaataaaatctagaaaattttcagacatcgtatgactatccgtttatagtttttatcgattgcaactctg |
4365652 |
T |
|
| Q |
746 |
gattaaaacta-----tattgattagtttgaatgtgtgatttttcctggattaattacttggagttttgatacgagaccaactgcatctccttcgtatgt |
840 |
Q |
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| T |
4365651 |
gattaaaactatattatattgattagtttgaatgtgtgatttttcctggattaattacttggagttttgatacgagaccaactgcatctccttcgtatgt |
4365552 |
T |
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| Q |
841 |
taattggttatctccaataaattctacagaaatgtttgatttcattttacatatcattcatggttttaattga |
913 |
Q |
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| T |
4365551 |
taattggttatctccaataaattctacagaaatgtttgatttcattttacatatcattcatggttttaattga |
4365479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 4366326 - 4366050
Alignment:
| Q |
1 |
aagttaaaagtgtgttcttttcggtgaagagggagagagaatcaaccccaaacccactccttgtccatcaattgagaagaatcaaaattcaaacccctta |
100 |
Q |
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||||||||||| |||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4366326 |
aagttaaaagtatgttcttttccgcgaaaagggagagagaatcaaccccaaaccctctccttgtccatcaatagagaagaatcaaaattcaaacccctta |
4366227 |
T |
|
| Q |
101 |
attctccctatgtgggcagcaacttagaaggagaagaagtaattagagatgaagagaagtcacgagaatggaagcttggaattgtagagatcaaagtcaa |
200 |
Q |
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| T |
4366226 |
attctccctatgtgggcagcaacttagaaggagaagaagtaattagagatgaagagaagtcacgagaatggaagcttggaattgtagagatcaaagtcaa |
4366127 |
T |
|
| Q |
201 |
tttggaaatttcatcaatctcttcttaagagagcctaaggtaacatagaatcccttccctaaaacatctatagggtg |
277 |
Q |
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| T |
4366126 |
tttggaaatttcatcaatctcttcttaagagagcctaaggtaacatagaatcccttccttaaaacatctatagggtg |
4366050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 816 - 915
Target Start/End: Complemental strand, 33652513 - 33652415
Alignment:
| Q |
816 |
gaccaactgcatctccttcgtatgttaattggttatctccaataaattctacagaaatgtttgatttcattttacatatcattcatggttttaattgatg |
915 |
Q |
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|||||| |||||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
33652513 |
gaccaattgcatcgccttcgtatgctaattggttatctctagtaaattctacaaaaatgtttgatttcgtttta-atatcattcatggttttaactgatg |
33652415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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