View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6324_high_2 (Length: 310)
Name: NF6324_high_2
Description: NF6324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6324_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 5230830 - 5230583
Alignment:
| Q |
18 |
aataggtaagataaaaattaaacatatgatcccaaatgaaatatttatagctttaaattaatggtagcatttgaatgagcatgaattaccagccagacca |
117 |
Q |
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| T |
5230830 |
aataggtaacataaaaattaaacatatgatcccaaatgaaatatttatagctttaaattaatggtagcatttgaatgagcatgacttaccagccagacca |
5230731 |
T |
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| Q |
118 |
attctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctacaacatagttcagtaaata |
217 |
Q |
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| T |
5230730 |
attctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctacaacatagttcagtaaata |
5230631 |
T |
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| Q |
218 |
tatatcaaacagagaaagatgaaagtaagaataaattaatattagttt |
265 |
Q |
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| T |
5230630 |
tatatcaaacagagaaagatgaaagtaagaataaattaatattagttt |
5230583 |
T |
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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 17126333 - 17126237
Alignment:
| Q |
104 |
taccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctaca |
200 |
Q |
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| T |
17126333 |
taccagccagtccaattttctgtccacatttttggtttgtagttcttgttgggagagaagttttcacagtaatatccattacaggtatcaatctaca |
17126237 |
T |
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