View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6325_high_10 (Length: 251)
Name: NF6325_high_10
Description: NF6325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6325_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 35145188 - 35144970
Alignment:
| Q |
1 |
attgctgtgcatgattccaagtttggttattcaacctgaatttaattgtgtgc--gtgttatacattatttaatatgcgagagtgtatactgcataatct |
98 |
Q |
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| T |
35145188 |
attgctgtgcatgattccaagtttggttattcaacctgaatttaattgtgtgcatgtgttatacattatttaatatgcgagagtgtatactgcataatct |
35145089 |
T |
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| Q |
99 |
aatatatagatagatggggacaactagaaacataataagttaattgaattccctttatttatcggtcataaatcaactagaagatatattaagaaggaac |
198 |
Q |
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| T |
35145088 |
aatatatagatagatggggacaactagaaacataataagttaattgaattccctttatttatcggtcataaatcaactagaagatatattaagaaggaac |
35144989 |
T |
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| Q |
199 |
aaaatatactccaactaag |
217 |
Q |
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| T |
35144988 |
aaaatatactccaactaag |
35144970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 35136843 - 35136764
Alignment:
| Q |
95 |
atctaatatatagatagatggggacaactagaaacataataagttaattgaattccctttatttatcggtcataaatcaa |
174 |
Q |
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| T |
35136843 |
atctaatatatagatagatggggacaactagaaacataataagttaattgaattctctttatttatcgatcataaatcaa |
35136764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 35137107 - 35137028
Alignment:
| Q |
26 |
gttattcaacctgaatttaattgtgtgc--gtgttatacattatttaatatgcgagagtgtatactgcataatctaatat |
103 |
Q |
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| T |
35137107 |
gttattcaacctgaatttaattgtgtgcatgtgttatacattatttaatacaggagagtgtaaactacataatctaatat |
35137028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 35136739 - 35136702
Alignment:
| Q |
177 |
agaagatatattaagaaggaacaaaatatactccaact |
214 |
Q |
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| T |
35136739 |
agaagatatattaagaagggacaaaatatactccaact |
35136702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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