View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6325_high_15 (Length: 237)

Name: NF6325_high_15
Description: NF6325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6325_high_15
NF6325_high_15
[»] chr2 (2 HSPs)
chr2 (16-176)||(14442132-14442294)
chr2 (198-233)||(14442292-14442327)
[»] chr1 (2 HSPs)
chr1 (17-101)||(25484982-25485068)
chr1 (17-87)||(32191124-32191196)
[»] chr7 (2 HSPs)
chr7 (17-81)||(25690753-25690819)
chr7 (17-51)||(16780777-16780811)
[»] chr8 (1 HSPs)
chr8 (57-90)||(37616271-37616304)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 14442132 - 14442294
Alignment:
Q  16 acaatcactttttaagccgattcaaccgatcttaaaggtgc--gcgtgagttaacccacgctgaaaaatatcgaacgagaattaactcctattaaattaa 113  Q
    |||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  14442132 acaatcactttttaagccgattcaactgatcttaaaggtgctagcgtgagttaacccacactgaaaaatatcgaacgggaattaactcctattaaattaa 14442231  T
Q  114 gggaatgattttcgaatcagttagttgaacaaaccatgcggaccatgaacacccttgcctatt 176  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  14442232 gggaatgattttcgaatcacttagttgaacaaaccatgcggaccatgaacatccttgcctatt 14442294  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 14442292 - 14442327
Alignment:
Q  198 atttgctggatggtgacaaatttgtgtaggtgttcc 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  14442292 atttgctggatggtgacaaatttgtgtaggtgttcc 14442327  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 25484982 - 25485068
Alignment:
Q  17 caatcactttttaagccgattcaaccgatcttaaaggtg--cgcgtgagttaacccacgctgaaaaatatcgaacgagaattaactc 101  Q
    ||||||||||||||||| |||||| |||||||||| |||   |||||||||||| ||||||| ||||| ||||||| || |||||||    
T  25484982 caatcactttttaagccaattcaaacgatcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagttaactc 25485068  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 32191196 - 32191124
Alignment:
Q  17 caatcactttttaagccgattcaaccgatcttaaaggtgc--gcgtgagttaacccacgctgaaaaatatcga 87  Q
    |||||| ||||||||  | |||||||||||||||| ||||  ||||||||||| | |||||||||||| ||||    
T  32191196 caatcattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaatctacgctgaaaaatgtcga 32191124  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 25690753 - 25690819
Alignment:
Q  17 caatcactttttaagccgattcaaccgatcttaaaggtg--cgcgtgagttaacccacgctgaaaaa 81  Q
    |||||||||||||||||| |||||||||||||||| |||   || ||| ||||| ||||||||||||    
T  25690753 caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattaactcacgctgaaaaa 25690819  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 16780811 - 16780777
Alignment:
Q  17 caatcactttttaagccgattcaaccgatcttaaa 51  Q
    ||||||||||||||| |||||||||||||||||||    
T  16780811 caatcactttttaagtcgattcaaccgatcttaaa 16780777  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 37616304 - 37616271
Alignment:
Q  57 gcgtgagttaacccacgctgaaaaatatcgaacg 90  Q
    |||||||||||||||||||||||||| |||||||    
T  37616304 gcgtgagttaacccacgctgaaaaatgtcgaacg 37616271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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