View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6325_high_6 (Length: 321)

Name: NF6325_high_6
Description: NF6325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6325_high_6
NF6325_high_6
[»] chr5 (3 HSPs)
chr5 (21-310)||(6159787-6160074)
chr5 (163-270)||(8987542-8987649)
chr5 (231-270)||(26045664-26045704)
[»] chr7 (6 HSPs)
chr7 (173-270)||(43344485-43344582)
chr7 (231-270)||(26385858-26385897)
chr7 (236-270)||(2339322-2339356)
chr7 (222-266)||(1819670-1819714)
chr7 (238-270)||(2331791-2331823)
chr7 (231-270)||(3478689-3478729)
[»] chr4 (2 HSPs)
chr4 (163-270)||(33283578-33283683)
chr4 (233-270)||(41231445-41231482)
[»] chr3 (3 HSPs)
chr3 (233-269)||(21152700-21152736)
chr3 (231-275)||(1652577-1652621)
chr3 (238-270)||(17572329-17572361)
[»] scaffold0127 (1 HSPs)
scaffold0127 (165-268)||(21181-21284)
[»] chr6 (5 HSPs)
chr6 (235-270)||(31611656-31611691)
chr6 (224-270)||(21029985-21030031)
chr6 (165-268)||(5746978-5747080)
chr6 (68-109)||(6764913-6764954)
chr6 (166-270)||(34093170-34093274)
[»] chr8 (2 HSPs)
chr8 (169-270)||(5221438-5221543)
chr8 (231-267)||(17720408-17720444)
[»] chr2 (1 HSPs)
chr2 (172-233)||(15817011-15817072)
[»] chr1 (3 HSPs)
chr1 (231-271)||(34775211-34775252)
chr1 (231-271)||(2878021-2878061)
chr1 (232-275)||(2987824-2987868)
[»] scaffold0620 (1 HSPs)
scaffold0620 (166-270)||(8504-8608)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 6160074 - 6159787
Alignment:
Q  21 gatggctttacattcatgaacaattaattatgtcaaaaacacagaggagctcaatgataaaaattatatttgttgccatagtttcactacaaaaagtgac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6160074 gatggctttacattcatgaacaattaattatgtcaaaaacacag--gagctcaatgataaaaattatatttgttgccatagtttcactacaaaaagtgac 6159977  T
Q  121 actatttgatgggcgcatttgaccaacaatgatcannnnnnnaacggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaat 220  Q
    ||||||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6159976 actatttgatgggtgcatttgaccaacaatgatcatttttttaacggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaat 6159877  T
Q  221 tagagactacaaaggcgccgtatataggcggaacatccaaaataaacacctacaatgatcattcttcttgatttttcttctgttcttcat 310  Q
     ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6159876 cagagactacaaaggcgctgtatataggcggaacacccaaaataaacacctacaatgatcattcttcttgatttttcttctgttcttcat 6159787  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 8987542 - 8987649
Alignment:
Q  163 aacggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaa 262  Q
    ||||||||| |||||| ||||||||| |||||||||  |||| |||||||| || ||| ||||||||| ||||| || |||||| |||||||| ||||||    
T  8987542 aacggcaaaatttatttaaaactcgacccctactcagaacgaacagagattggtaaatcagagactacgaaggcaccatatatatgcggaacacccaaaa 8987641  T
Q  263 taaacacc 270  Q
    ||||||||    
T  8987642 taaacacc 8987649  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 26045664 - 26045704
Alignment:
Q  231 aaaggcgccgtatataggcggaacatcc-aaaataaacacc 270  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  26045664 aaaggcgccgtatatagacggaacatccaaaaataaacacc 26045704  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 43344485 - 43344582
Alignment:
Q  173 tttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaataaacacc 270  Q
    |||||| |||||||||||||| ||||||||||  |||||   || ||  |||||||||||| | ||||||||||||||||| |  |||||||||||||    
T  43344485 tttatttaaaactcgatccctgctcaagacgaatagagaccggtaaaccagagactacaaatgtgccgtatataggcggaaaactcaaaataaacacc 43344582  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 26385858 - 26385897
Alignment:
Q  231 aaaggcgccgtatataggcggaacatccaaaataaacacc 270  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  26385858 aaagacgccgtatataggcggaacacccaaaataaacacc 26385897  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 2339322 - 2339356
Alignment:
Q  236 cgccgtatataggcggaacatccaaaataaacacc 270  Q
    |||||||||||| ||||||||||||||||||||||    
T  2339322 cgccgtatatagacggaacatccaaaataaacacc 2339356  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 1819670 - 1819714
Alignment:
Q  222 agagactacaaaggcgccgtatataggcggaacatccaaaataaa 266  Q
    ||||||||||||||||||||||| | ||||||||  |||||||||    
T  1819670 agagactacaaaggcgccgtatacaagcggaacactcaaaataaa 1819714  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 2331791 - 2331823
Alignment:
Q  238 ccgtatataggcggaacatccaaaataaacacc 270  Q
    |||||||||| ||||||||||||||||||||||    
T  2331791 ccgtatatagacggaacatccaaaataaacacc 2331823  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 3478729 - 3478689
Alignment:
Q  231 aaaggcgccgtatataggcggaacatcc-aaaataaacacc 270  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  3478729 aaaggcgccgtatataggcggaacacccgaaaataaacacc 3478689  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 33283578 - 33283683
Alignment:
Q  163 aacggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaa 262  Q
    ||||| ||| |||||||||| |||||||||| || |||||||  ||||||  || ||| ||||| || |||| ||  |||||||| ||||||||||||||    
T  33283578 aacggtaaaatttattaaaatctcgatccctgcttaagacga--agagatcggtaaatcagagattataaagacgttgtatatagacggaacatccaaaa 33283675  T
Q  263 taaacacc 270  Q
    ||||||||    
T  33283676 taaacacc 33283683  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 41231445 - 41231482
Alignment:
Q  233 aggcgccgtatataggcggaacatccaaaataaacacc 270  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  41231445 aggcgccgtatatagacggaacatccaaaataaacacc 41231482  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 21152700 - 21152736
Alignment:
Q  233 aggcgccgtatataggcggaacatccaaaataaacac 269  Q
    |||||||||||||||||||||||||||||||||||||    
T  21152700 aggcgccgtatataggcggaacatccaaaataaacac 21152736  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 1652577 - 1652621
Alignment:
Q  231 aaaggcgccgtatataggcggaacatccaaaataaacacctacaa 275  Q
    ||||||| ||||||||||||||||| || ||||||||||| ||||    
T  1652577 aaaggcgtcgtatataggcggaacacccgaaataaacacccacaa 1652621  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 17572329 - 17572361
Alignment:
Q  238 ccgtatataggcggaacatccaaaataaacacc 270  Q
    |||||||||||| ||||||||||||||||||||    
T  17572329 ccgtatataggcagaacatccaaaataaacacc 17572361  T

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Target: scaffold0127 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 21181 - 21284
Alignment:
Q  165 cggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaata 264  Q
    ||||||| |||||| ||||||||||| || | |||||||| || | |   || ||| |||||||||||||| | ||||||||||||||||| |||||||     
T  21181 cggcaaaatttatttaaaactcgatctctgcacaagacgaacaaaaacctgtaaatcagagactacaaaggtgtcgtatataggcggaacacccaaaatg 21280  T
Q  265 aaca 268  Q
    ||||    
T  21281 aaca 21284  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 270
Target Start/End: Complemental strand, 31611691 - 31611656
Alignment:
Q  235 gcgccgtatataggcggaacatccaaaataaacacc 270  Q
    ||||||||||||||||||||||||||||||||||||    
T  31611691 gcgccgtatataggcggaacatccaaaataaacacc 31611656  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 21030031 - 21029985
Alignment:
Q  224 agactacaaaggcgccgtatataggcggaacatccaaaataaacacc 270  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  21030031 agactacaaaggtgccgtatgtaggcggaacacccaaaataaacacc 21029985  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 5747080 - 5746978
Alignment:
Q  165 cggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaata 264  Q
    ||||||| |||||| ||||||||||| |||| |||||||| |||| |   ||  || | |||||||||||||| ||||||||||||||||| | |||||     
T  5747080 cggcaaaatttatttaaaactcgatctctacacaagacgaacagaaacctgtagatca-agactacaaaggcgtcgtatataggcggaacacctaaaatg 5746982  T
Q  265 aaca 268  Q
    ||||    
T  5746981 aaca 5746978  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 6764954 - 6764913
Alignment:
Q  68 agctcaatgataaaaattatatttgttgccatagtttcacta 109  Q
    ||||||||| |||||||| ||| |||||||||||||||||||    
T  6764954 agctcaatggtaaaaattctatgtgttgccatagtttcacta 6764913  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 34093274 - 34093170
Alignment:
Q  166 ggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaataa 265  Q
    |||||| |||||| ||||||||||| ||||| |||||||  |||||   || ||||| | |||||||| ||  |||||||| || ||| | |||||||||    
T  34093274 ggcaaaatttatttaaaactcgatctctactaaagacgaatagagaccggttaattatatactacaaaagcatcgtatataagctgaatacccaaaataa 34093175  T
Q  266 acacc 270  Q
    |||||    
T  34093174 acacc 34093170  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 5221438 - 5221543
Alignment:
Q  169 aaattttattaa-aaactcgatccctactcaagacgagcagagattagtgaattagagactacaa---aggcgccgtatataggcggaacatccaaaata 264  Q
    |||||||||||| ||||| | ||| | | |||||||| |||||||| || ||  ||| |||||||   ||||||||||||||||||||||| |||||| |    
T  5221438 aaattttattaataaacttggtccgtgcacaagacgaacagagattggtcaacaagaaactacaacagaggcgccgtatataggcggaacacccaaaaga 5221537  T
Q  265 aacacc 270  Q
    ||||||    
T  5221538 aacacc 5221543  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 17720408 - 17720444
Alignment:
Q  231 aaaggcgccgtatataggcggaacatccaaaataaac 267  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  17720408 aaaggcgccgtatataggcagaacacccaaaataaac 17720444  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 15817011 - 15817072
Alignment:
Q  172 ttttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaa 233  Q
    |||||||||||||| |||| || ||||||| || ||||||  ||| ||||||||||||||||    
T  15817011 ttttattaaaaactagatctctgctcaagatgaacagagaccagtcaattagagactacaaa 15817072  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 34775252 - 34775211
Alignment:
Q  231 aaaggcgccgtatataggcggaacatcc-aaaataaacacct 271  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  34775252 aaaggcgccgtatataggcggaacacccgaaaataaacacct 34775211  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 2878061 - 2878021
Alignment:
Q  231 aaaggcgccgtatataggcggaacatccaaaataaacacct 271  Q
    |||||||  |||||||||||||||||| |||||||||||||    
T  2878061 aaaggcgttgtatataggcggaacatctaaaataaacacct 2878021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 2987824 - 2987868
Alignment:
Q  232 aaggcgccgtatataggcggaacatcc-aaaataaacacctacaa 275  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||    
T  2987824 aaggcgccgtatataggcggaacatccgaaaacaaacaccaacaa 2987868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 8608 - 8504
Alignment:
Q  166 ggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaataa 265  Q
    |||||| |||||| ||||||||||| ||||| |||||||  |||||   || ||||| | |||||||| ||  |||||||| || ||| | |||||||||    
T  8608 ggcaaaatttatttaaaactcgatctctactaaagacgaatagagaccggttaattatatactacaaaagcatcgtatataagctgaatacccaaaataa 8509  T
Q  266 acacc 270  Q
    |||||    
T  8508 acacc 8504  T

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