View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6325_high_9 (Length: 254)

Name: NF6325_high_9
Description: NF6325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6325_high_9
NF6325_high_9
[»] chr1 (18 HSPs)
chr1 (16-246)||(35145206-35145436)
chr1 (38-246)||(35216950-35217158)
chr1 (38-231)||(35206418-35206611)
chr1 (15-246)||(35213561-35213792)
chr1 (73-246)||(45526180-45526355)
chr1 (123-241)||(35295158-35295276)
chr1 (157-246)||(35476973-35477062)
chr1 (157-246)||(35203159-35203248)
chr1 (165-245)||(35192820-35192900)
chr1 (154-245)||(35272900-35272991)
chr1 (157-244)||(45534386-45534473)
chr1 (155-242)||(35228427-35228514)
chr1 (171-242)||(35265341-35265412)
chr1 (67-142)||(35194740-35194817)
chr1 (169-246)||(35222767-35222844)
chr1 (159-224)||(8640315-8640380)
chr1 (203-245)||(35148908-35148950)
chr1 (153-206)||(35253954-35254007)
[»] chr2 (1 HSPs)
chr2 (154-231)||(33137636-33137713)
[»] chr3 (2 HSPs)
chr3 (154-231)||(17663857-17663934)
chr3 (154-231)||(19246358-19246435)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 35145436 - 35145206
Alignment:
Q  16 aaaccattagtttgaaaaacaaaaggctgatgccaatattttctagaacaacataagaatgctcaattgattgttgtaaaatatattgtgatttttgaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35145436 aaaccattagtttgaaaaacaaaaggctgatgccaatattttctagaacaacataagaatgctcaattgattgttgtaaaatatattgtgatttttgaaa 35145337  T
Q  116 tgcttaattcagaatgctaataataagctttggaaatattgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35145336 tgcttaattcagaatgctaataataagctttggaaatattgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgct 35145237  T
Q  216 agatctctcgccattgcttggggtgatgatg 246  Q
    ||||||||||||||||||||| |||||||||    
T  35145236 agatctctcgccattgcttggagtgatgatg 35145206  T

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Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 38 - 246
Target Start/End: Complemental strand, 35217158 - 35216950
Alignment:
Q  38 aaggctgatgccaatattttctagaacaacataagaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcagaatgctaata 137  Q
    ||||| ||||| ||||||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35217158 aaggcagatgcaaatattttctacagctacatacgaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcaaaatgctaata 35217059  T
Q  138 ataagctttggaaatattgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggg 237  Q
    |||||||||||||||||||||||||| || || |||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |    
T  35217058 ataagctttggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctctccattgcttgcg 35216959  T
Q  238 gtgatgatg 246  Q
    |||||||||    
T  35216958 gtgatgatg 35216950  T

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Target: chr1; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 38 - 231
Target Start/End: Complemental strand, 35206611 - 35206418
Alignment:
Q  38 aaggctgatgccaatattttctagaacaacataagaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcagaatgctaata 137  Q
    ||||| ||||| ||||||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35206611 aaggcagatgcaaatattttctacagctacatacgaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcaaaatgctaata 35206512  T
Q  138 ataagctttggaaatattgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattg 231  Q
    |||||||||||||||||||||||||| || || |||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  35206511 ataagctttggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctcggcattg 35206418  T

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Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 35213792 - 35213561
Alignment:
Q  15 aaaaccattagtttgaaaaacaaaaggctgatgccaatattttctagaacaacataagaatgctcaattgattgttgtaaaatatattgtgatttttgaa 114  Q
    ||||||||||  || ||||||  ||||| |||||||| |||||||| | | ||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  35213792 aaaaccattatgttaaaaaacttaaggcagatgccaacattttctacatctacatacgaatgctcagttgattgttataaaatatattgtgatttttgaa 35213693  T
Q  115 atgcttaattcagaatgctaataataagctttggaaatattgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgc 214  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| | ||| | ||| ||||||| ||||| ||| || ||||    
T  35213692 atgcttagttcagaatgctaataataaactttggaaatattgaaatgcagagctttcaattggagagaaaaagtggaaaaaaatgttatatgcttgctgc 35213593  T
Q  215 tagatctctcgccattgcttggggtgatgatg 246  Q
    ||||||||||| ||||||||||||||||||||    
T  35213592 tagatctctcggcattgcttggggtgatgatg 35213561  T

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Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 45526355 - 45526180
Alignment:
Q  73 aatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcagaatgctaataataagcttt--ggaaatattgaaatgcaaagcttt 170  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||| |||||| ||  ||  ||||||||||||| ||||||    
T  45526355 aatgctcaattgattgttgtaaaatatatggttattttttaaatgcttagttcagaatgctaatcataagccttctgggtatattgaaatgcagagcttt 45526256  T
Q  171 caattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggggtgatgatg 246  Q
    |||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||  ||||  ||||||||||||||    
T  45526255 caattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattatttggggtgatgatg 45526180  T

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Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 35295158 - 35295276
Alignment:
Q  123 ttcagaatgctaataataagctttggaaatattgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctc 222  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||| | ||||||||||| ||| || ||||||||||||    
T  35295158 ttcaaaatgctaataataagctttggaaatattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctc 35295257  T
Q  223 tcgccattgcttggggtga 241  Q
    || | |||  |||||||||    
T  35295258 tcactattaattggggtga 35295276  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 35477062 - 35476973
Alignment:
Q  157 aaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggggtgatgatg 246  Q
    ||||||| ||| |||||||| ||||| ||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  35477062 aaatgcagagccttcaattggatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctcgccattgcttggggtgatgatg 35476973  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 35203248 - 35203159
Alignment:
Q  157 aaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggggtgatgatg 246  Q
    ||||||| ||| |||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||    
T  35203248 aaatgcagagcattcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctccattgcttggggtaatgatg 35203159  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 35192900 - 35192820
Alignment:
Q  165 agctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggggtgatgat 245  Q
    |||||||||||| ||||  ||||| ||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||    
T  35192900 agctttcaattggataggaagagtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgat 35192820  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 35272991 - 35272900
Alignment:
Q  154 ttgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggggtgatgat 245  Q
    |||||||||| ||| |||||||  | ||| ||||| ||||||||||||||||| |||||||||||||||| || |||| |||||||||||||    
T  35272991 ttgaaatgcagagcattcaattagagagaaagagtggaaaaaagtgttacatgctttctgctagatctcttgcaattgtttggggtgatgat 35272900  T

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Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 45534473 - 45534386
Alignment:
Q  157 aaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggggtgatga 244  Q
    ||||||| |||||||||||  ||||| | ||| | ||||||||||||||| || |||||||||||||||||||| |||||||||||||    
T  45534473 aaatgcagagctttcaattagatagaaatagtgggaaaaagtgttacatgcttgctgctagatctctcgccattacttggggtgatga 45534386  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 35228514 - 35228427
Alignment:
Q  155 tgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggggtgat 242  Q
    ||||||| | || ||||||||| | ||| ||||| |||| |||||||| ||| |||||||||||||||| |||||| |||||||||||    
T  35228514 tgaaatgtagagttttcaattggagagaaagagtggaaagaagtgttatatgctttctgctagatctcttgccattacttggggtgat 35228427  T

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Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 35265412 - 35265341
Alignment:
Q  171 caattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggggtgat 242  Q
    |||||| | ||| ||||| ||||||||||||||||| |||||||||||||||| || |||| ||||||||||    
T  35265412 caattggacagaaagagtggaaaaaagtgttacatgctttctgctagatctcttgcaattgtttggggtgat 35265341  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 35194817 - 35194740
Alignment:
Q  67 cataagaatgctcaattgattgttgtaaaatatat--tgtgatttttgaaatgcttaattcagaatgctaataataag 142  Q
    |||| ||||||||||||||||| ||||||||||||  |||||||||||| ||| ||| ||||||||||| | ||||||    
T  35194817 catacgaatgctcaattgattgatgtaaaatatatattgtgatttttgatatgtttagttcagaatgctgacaataag 35194740  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 35222844 - 35222767
Alignment:
Q  169 ttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggggtgatgatg 246  Q
    |||||||| ||||| ||||| |||||||||||  |||| || ||||||||||||||| ||||| ||||| ||||||||    
T  35222844 ttcaattggatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctcgacattgattgggatgatgatg 35222767  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 8640380 - 8640315
Alignment:
Q  159 atgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctc 224  Q
    ||||| ||| |||||||| | ||| ||||| ||||||||||||||||| || ||||||||||||||    
T  8640380 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 8640315  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 35148950 - 35148908
Alignment:
Q  203 catggtttctgctagatctctcgccattgcttggggtgatgat 245  Q
    |||| |||||||||||||||||  |||||||||||||||||||    
T  35148950 catgctttctgctagatctctcagcattgcttggggtgatgat 35148908  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 35254007 - 35253954
Alignment:
Q  153 attgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatg 206  Q
    ||||||||||| || ||||||||| ||||| ||||| ||||||| |||||||||    
T  35254007 attgaaatgcagagttttcaattggatagaaagagtggaaaaaattgttacatg 35253954  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 33137636 - 33137713
Alignment:
Q  154 ttgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattg 231  Q
    |||||||||| |||||||||||| | ||| ||||| || |||||||||||||| || |||||||||||||| ||||||    
T  33137636 ttgaaatgcagagctttcaattgcacagaaagagtggacaaaagtgttacatgcttgctgctagatctctcaccattg 33137713  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 17663857 - 17663934
Alignment:
Q  154 ttgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattg 231  Q
    |||||||||| |||||||||||| | ||| ||||| || | ||||||||| || || |||||||||||||| ||||||    
T  17663857 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctcaccattg 17663934  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 19246358 - 19246435
Alignment:
Q  154 ttgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattg 231  Q
    |||||||||| |||||||||||| | ||| ||||| || | ||||||||| || || |||||||||||||| ||||||    
T  19246358 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctcaccattg 19246435  T

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