View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6325_low_13 (Length: 245)
Name: NF6325_low_13
Description: NF6325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6325_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1253276 - 1253518
Alignment:
| Q |
1 |
tcatgatccaaaaagttaagtgaaaatcatttctaaattatttcttcttttctctagtgcacgggagtaattgatgaaactttattctttaaaatcttat |
100 |
Q |
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| T |
1253276 |
tcatgatccaaaaggttaagtgaaaatcatttctaaattatttcttcttttccctagtgcacgggagtaattgatgaaactttattctctaaaatcttat |
1253375 |
T |
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| Q |
101 |
ctatcgatacgcttgaagcttgagtgtgtgatttacttcaacaaatccaaatattttcaagggaattcacagttatccttatctc------------ttt |
188 |
Q |
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| T |
1253376 |
ctatcgatacgcttgaaacttgagtgtgtgattcacttcaacaaatccaaatattttcaaggaaattcacagttatccttatctctattacatcaagttt |
1253475 |
T |
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| Q |
189 |
gcataaaccggtggaggcaaattgaatttaaaactaattagtg |
231 |
Q |
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| T |
1253476 |
gcataaaccggtggaggcaaattgaatttaaaactaattagtg |
1253518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 17862446 - 17862500
Alignment:
| Q |
34 |
taaattatttcttcttttctctagtgcacgggagtaattgatgaaactttattct |
88 |
Q |
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| T |
17862446 |
taaatgatttcttcatttctctagagcacgagagtaaaagatgaaactttattct |
17862500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 10917523 - 10917558
Alignment:
| Q |
35 |
aaattatttcttcttttctctagtgcacgggagtaa |
70 |
Q |
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| T |
10917523 |
aaatcatttcttcttttctctagtgcacgggagtaa |
10917558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 31285932 - 31285973
Alignment:
| Q |
33 |
ctaaattatttcttcttttctctagtgcacgggagtaattga |
74 |
Q |
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| T |
31285932 |
ctaaattatttcttcttttctctggtgaacgcgagtaattga |
31285973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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