View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6325_low_16 (Length: 236)
Name: NF6325_low_16
Description: NF6325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6325_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 38860488 - 38860292
Alignment:
| Q |
1 |
agtagtaacatctttttctgccatttattttgtagcatgtggaagaaatgcaaatttgttttaacataacaattcaattatgttagtagtataatgatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38860488 |
agtagtaacatctttttctgccatttattttgtagcatgtggaagaaatgcaaatttgttttaacataacaattcaattatgttagtagtataatgatat |
38860389 |
T |
|
| Q |
101 |
tgtattatataccaatcaaatcttaaatgaaatatggttgaggaaagaacaactaaatataaaatagtttaaatatat-ccctcatatctttttaat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38860388 |
tgtattatataccaatcaaatcttaaatgaaatatggttgaggaaagaacaaataaatataaaatagtttaaatatatcccctcatatctttttaat |
38860292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University