View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6325_low_4 (Length: 362)

Name: NF6325_low_4
Description: NF6325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6325_low_4
NF6325_low_4
[»] chr4 (20 HSPs)
chr4 (80-302)||(31914531-31914755)
chr4 (230-302)||(20627535-20627607)
chr4 (242-302)||(23089270-23089330)
chr4 (242-302)||(31135178-31135238)
chr4 (238-302)||(12206772-12206836)
chr4 (238-302)||(12210914-12210978)
chr4 (242-302)||(23088284-23088344)
chr4 (238-302)||(31689185-31689249)
chr4 (243-302)||(42523886-42523945)
chr4 (235-302)||(54501635-54501702)
chr4 (233-283)||(11791388-11791438)
chr4 (238-287)||(31135894-31135943)
chr4 (243-303)||(34978351-34978411)
chr4 (250-302)||(48314375-48314427)
chr4 (234-303)||(20628330-20628399)
chr4 (243-300)||(41164169-41164226)
chr4 (238-302)||(34837967-34838031)
chr4 (231-283)||(11792307-11792359)
chr4 (233-294)||(42523218-42523279)
chr4 (250-302)||(48315193-48315245)
[»] chr6 (12 HSPs)
chr6 (230-302)||(19237591-19237663)
chr6 (238-294)||(17280695-17280751)
chr6 (230-283)||(10792510-10792563)
chr6 (238-302)||(8238077-8238141)
chr6 (230-302)||(10793567-10793639)
chr6 (252-302)||(8683866-8683916)
chr6 (233-291)||(17279903-17279961)
chr6 (230-283)||(7001761-7001814)
chr6 (242-302)||(5860558-5860618)
chr6 (243-302)||(25359507-25359566)
chr6 (242-294)||(29375043-29375095)
chr6 (93-121)||(17280562-17280590)
[»] chr5 (2 HSPs)
chr5 (230-302)||(33471173-33471245)
chr5 (249-294)||(22671622-22671667)
[»] chr2 (6 HSPs)
chr2 (230-302)||(18767557-18767629)
chr2 (230-287)||(16591514-16591571)
chr2 (236-302)||(29558160-29558225)
chr2 (242-302)||(9244252-9244312)
chr2 (233-302)||(5483905-5483974)
chr2 (231-283)||(45631128-45631180)
[»] chr8 (7 HSPs)
chr8 (230-302)||(30971994-30972066)
chr8 (233-302)||(30971293-30971362)
chr8 (230-302)||(1636856-1636928)
chr8 (238-302)||(16101531-16101595)
chr8 (238-302)||(16106020-16106084)
chr8 (238-302)||(16113260-16113324)
chr8 (242-300)||(32744020-32744078)
[»] chr7 (10 HSPs)
chr7 (238-302)||(5995261-5995325)
chr7 (242-302)||(5997611-5997671)
chr7 (242-302)||(41970896-41970956)
chr7 (230-302)||(45551793-45551865)
chr7 (231-302)||(45551006-45551077)
chr7 (303-349)||(27568619-27568665)
chr7 (231-294)||(27258096-27258160)
chr7 (234-294)||(27268234-27268294)
chr7 (252-302)||(28778109-28778159)
chr7 (264-302)||(38887339-38887377)
[»] chr3 (11 HSPs)
chr3 (238-302)||(4300941-4301005)
chr3 (238-302)||(17619140-17619204)
chr3 (238-302)||(54285811-54285875)
chr3 (248-302)||(27359841-27359895)
chr3 (247-302)||(28422850-28422905)
chr3 (243-302)||(40929858-40929917)
chr3 (238-294)||(17615038-17615094)
chr3 (250-302)||(27317483-27317535)
chr3 (246-302)||(51341882-51341938)
chr3 (238-272)||(1602477-1602511)
chr3 (238-302)||(29032801-29032864)
[»] chr1 (13 HSPs)
chr1 (238-302)||(42026904-42026968)
chr1 (238-302)||(42031689-42031753)
chr1 (230-283)||(34269072-34269125)
chr1 (230-283)||(34275307-34275360)
chr1 (230-302)||(34267984-34268056)
chr1 (233-302)||(16801981-16802050)
chr1 (243-302)||(17239407-17239466)
chr1 (233-283)||(24790841-24790891)
chr1 (233-302)||(16802673-16802742)
chr1 (233-302)||(17238605-17238674)
chr1 (242-294)||(34361226-34361278)
chr1 (242-290)||(47722009-47722057)
chr1 (242-290)||(47729001-47729049)
[»] scaffold0015 (1 HSPs)
scaffold0015 (247-302)||(45341-45396)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 80 - 302
Target Start/End: Complemental strand, 31914755 - 31914531
Alignment:
Q  80 gaagagagatagtaaaagagaaggaagaaagagaatggtgggcatgaggagatctcgtaaaacaaaatagnnnnnnnnnta-tgaaaatccaacatttt- 177  Q
    |||||||| ||  ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||          | |||||||| ||||||||     
T  31914755 gaagagagttaacaaaggagaatgaagaaagagaatggtgggcctgaggagatctcgtaaaacaaaatagaaaaaaaaaaaatgaaaatctaacattttt 31914656  T
Q  178 aatgaaaattacatttatatcctttagttttaatttttccnnnnnnnnnnnncaagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagac 277  Q
    ||||||||||| |||||||||||||||||||| |||||||             ||||||||||||||||||||||||||||| ||||||||||||||||     
T  31914655 aatgaaaattatatttatatcctttagttttagtttttccaaaaaacaaaaataagggtctttgtgtccaagtgaaaaggtgctggttgctaaaatagat 31914556  T
Q  278 attcatgaaaatgagtgagtctatt 302  Q
     |||||||||||||||| |||||||    
T  31914555 cttcatgaaaatgagtgggtctatt 31914531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 20627607 - 20627535
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  20627607 caagggtctttgtgtccaagtgaaaaggtgttgggtgctaaaatagactttcatgaaaatgagtgggtctatt 20627535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 23089270 - 23089330
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  23089270 tgtccaagtgaaaaggtgttggttgctaaaatagacctacatgaaaatgagtgggtctatt 23089330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 31135238 - 31135178
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||    
T  31135238 tgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagttggtctatt 31135178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 12206836 - 12206772
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||| |||||||||| |||||||    
T  12206836 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcataaaaatgagtgggtctatt 12206772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 12210914 - 12210978
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||  |||||||    
T  12210914 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagttggtctatt 12210978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 23088344 - 23088284
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||||||||| |||||||    
T  23088344 tgtcgaagtgagaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctatt 23088284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 31689249 - 31689185
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||| |||||||    
T  31689249 tttgtgtccgagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 31689185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 42523886 - 42523945
Alignment:
Q  243 gtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||||||||  ||||||||| |||| ||||||||||||||||||||||||    
T  42523886 gtccaagtgaaaaggtgttacttgctaaaacagactttcatgaaaatgagtgagtctatt 42523945  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 54501635 - 54501702
Alignment:
Q  235 gtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||| ||||||||| |||| ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  54501635 gtctttttgtccaagtaaaaatgtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 54501702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 11791438 - 11791388
Alignment:
Q  233 gggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcat 283  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  11791438 gggtctttgtgtccaagtgaaaaggtattgcttgctaaaatagacattcat 11791388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 31135894 - 31135943
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaa 287  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  31135894 tttgtgtccaagtgaaaaggtgttggttgctaaaatacaccttcatgaaa 31135943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 34978411 - 34978351
Alignment:
Q  243 gtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctattt 303  Q
    |||||| ||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||    
T  34978411 gtccaattgaaaaggtgttggttgataaaatagaccttcataaaaatgagtgggtctattt 34978351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 48314427 - 48314375
Alignment:
Q  250 tgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  48314427 tgaaaaggtgttgcttgctaaaatagactttcatgaaaatgagtgggtctatt 48314375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 20628330 - 20628399
Alignment:
Q  234 ggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctattt 303  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||||| ||||| |||||| ||| ||||||||    
T  20628330 ggtctttttgtcctagtgaaaaggtgttgcttggtaaaatagaccttcataaaaatgggtgggtctattt 20628399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 41164169 - 41164226
Alignment:
Q  243 gtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtcta 300  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||||||| || |||||    
T  41164169 gtccaagtgaaaatgtgttggttgctaaaatagactttcataaaaatgaatgggtcta 41164226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 34837967 - 34838031
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||| |||||| |||||||||||||||||| |  ||||| |||||||||| |||||||    
T  34837967 tttgtgtccaattgaaaaagtgttggttgctaaaataaaacttcataaaaatgagtgggtctatt 34838031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 11792307 - 11792359
Alignment:
Q  231 aagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcat 283  Q
    |||||| |||||||||||||| |||||||| | |||||||||||||| |||||    
T  11792307 aagggtttttgtgtccaagtgtaaaggtgtagcttgctaaaatagaccttcat 11792359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 42523279 - 42523218
Alignment:
Q  233 gggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtg 294  Q
    ||||||||  |||||| ||||||||||||  ||||||||| |||| ||||| ||||||||||    
T  42523279 gggtcttttggtccaaatgaaaaggtgttacttgctaaaagagaccttcataaaaatgagtg 42523218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 48315193 - 48315245
Alignment:
Q  250 tgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||| ||||||||||| || || |||||||| |||| |||||||    
T  48315193 tgaaaaggtgttgcttgctaaaataaacctttatgaaaataagtgggtctatt 48315245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 19237591 - 19237663
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  19237591 caagggtctttatgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctatt 19237663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 17280695 - 17280751
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtg 294  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  17280695 tttgtgtccaagtgaaaaggtgttggttgctaaaatagaccttaatgaaaatgagtg 17280751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 10792563 - 10792510
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcat 283  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  10792563 caagggtctttgtgtccaaatgaaaaggtgttgcttgctaaaatagaccttcat 10792510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 8238141 - 8238077
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||| |||||| ||||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  8238141 tttgggtccaattgaaaaggtgttggttgatagaatagactttcataaaaatgagtgagtctatt 8238077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 10793567 - 10793639
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||| || || |||  ||||| |||||||    
T  10793567 caagggtttttgtgtccaagtgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctatt 10793639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 8683866 - 8683916
Alignment:
Q  252 aaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||| |||||||||||||||||||| |||||||||||||||| |||||||    
T  8683866 aaaagatgttggttgctaaaatagaccttcatgaaaatgagtgggtctatt 8683916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 17279961 - 17279903
Alignment:
Q  233 gggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatga 291  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  17279961 gggtatttgtgtccaagtaaaaaggtgctggttgctaaaatagaccttcataaaaatga 17279903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 7001761 - 7001814
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcat 283  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||||| |||||    
T  7001761 caagggtcattgtgtccaagtgaaaaggtgttgcatgctaaaatagaccttcat 7001814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 5860618 - 5860558
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||| |||||| ||||| |||||||||||| || ||||| |||||||||| |||||||    
T  5860618 tgtccaaatgaaaatgtgtttgttgctaaaatacaccttcataaaaatgagtgggtctatt 5860558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 25359566 - 25359507
Alignment:
Q  243 gtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatga-gtgagtctatt 302  Q
    |||||| | |||||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  25359566 gtccaaataaaaaggtgttggttgctaaaatagactttcat-aaaatgaagtgagtctatt 25359507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 29375043 - 29375095
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtg 294  Q
    |||||||||||||||||| |  |||||||||| ||| ||||||||||||||||    
T  29375043 tgtccaagtgaaaaggtgctccttgctaaaatggaccttcatgaaaatgagtg 29375095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 17280562 - 17280590
Alignment:
Q  93 aaaagagaaggaagaaagagaatggtggg 121  Q
    |||||||||||||||||||||||||||||    
T  17280562 aaaagagaaggaagaaagagaatggtggg 17280590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 33471245 - 33471173
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||||    
T  33471245 caagggtctttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgaatgggtctatt 33471173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 22671667 - 22671622
Alignment:
Q  249 gtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtg 294  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||    
T  22671667 gtgaaaaggtgttggttgttaaaatagaccttcatgaaaatgagtg 22671622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 18767557 - 18767629
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||||    
T  18767557 caagggtctttgtgtctaagtgaaaaggtgttggttgctaaaatagacctttataaaaatgagtgagtctatt 18767629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 16591514 - 16591571
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaa 287  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16591514 caagggtttttgtgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaa 16591571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 29558225 - 29558160
Alignment:
Q  236 tctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||| |||||||    
T  29558225 tctttgtgtccaagtaaaaaggtgttggttgct-aaatagaccttcataaaaatgagtgggtctatt 29558160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 9244312 - 9244252
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||| |||||||||||||| ||||||||||||| ||||| |||||||||| |||||||    
T  9244312 tgtccaactgaaaaggtgttggatgctaaaatagaccttcataaaaatgagtgggtctatt 9244252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 5483905 - 5483974
Alignment:
Q  233 gggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||| ||| ||||||| |||||||||||||| ||||||||||||| || ||||||||||||  |||||||    
T  5483905 gggtgtttttgtccaattgaaaaggtgttggatgctaaaatagacctttatgaaaatgagttggtctatt 5483974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 45631128 - 45631180
Alignment:
Q  231 aagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcat 283  Q
    |||||| ||| |||||||||| |||||||| | |||||||||||||| |||||    
T  45631128 aagggtttttatgtccaagtgtaaaggtgtagcttgctaaaatagaccttcat 45631180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 30971994 - 30972066
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  30971994 caagggtttttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctatt 30972066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 30971362 - 30971293
Alignment:
Q  233 gggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||    
T  30971362 gggtttttgtgtccaagtgaaaaagtgatggttgctaaaatagaccttcatgaaaatgagtgggtctatt 30971293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 1636928 - 1636856
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||  ||||||||||||||||| ||||||    
T  1636928 caagggtctttgtgtccaaatgaaaagatgttggttgcaaaaatagatcttcatgaaaatgagtgaatctatt 1636856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 16101595 - 16101531
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||    
T  16101595 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgtgtctatt 16101531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 16106020 - 16106084
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||    
T  16106020 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 16106084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 16113260 - 16113324
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||    
T  16113260 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 16113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 32744078 - 32744020
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtcta 300  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||||| | ||||||    
T  32744078 tgtccacgtgaaaaggtgttggttgctaaaatagaccttcataaaaatgaataagtcta 32744020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 5995325 - 5995261
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  5995325 tttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctatt 5995261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 5997611 - 5997671
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  5997611 tgtccaagtgaaaaggtgctggttgctaaaatagaccttcatgaaaatgagtgggtctatt 5997671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 41970956 - 41970896
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  41970956 tgtccaagtgaaaaggtgttggttgctaaaatagatcttcatgaaaatgagtgggtctatt 41970896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 45551793 - 45551865
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  45551793 caagggtctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctatt 45551865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 45551077 - 45551006
Alignment:
Q  231 aagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||| |||| || |||||||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  45551077 aagggtctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctatt 45551006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 27568665 - 27568619
Alignment:
Q  303 tattggttgtgtcacacatctagttagttagtaacattcttggtgat 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27568665 tattggttgtgtcacacatctagttagttagtaacattcttggtgat 27568619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 27258096 - 27258160
Alignment:
Q  231 aagggtctttgtgtccaagtgaaaaggtgttggttgctaaaataga-cattcatgaaaatgagtg 294  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  27258096 aagggtctttatgtccaagtgaaaaggtgttgattgctaaaatagacccttcatgaaaatgagtg 27258160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 27268234 - 27268294
Alignment:
Q  234 ggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtg 294  Q
    ||||||| |||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  27268234 ggtctttatgtccaagtgaaaaggtgctgattgctaaaatagaccttcatgaaaatgagtg 27268294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 28778109 - 28778159
Alignment:
Q  252 aaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||| |||||||||||| || ||||||||||||| |||||||    
T  28778109 aaaaggtgttggtcgctaaaatagaccttgatgaaaatgagtgggtctatt 28778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 38887377 - 38887339
Alignment:
Q  264 ttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38887377 ttgctaaaatagaccttcatgaaaatgagtgagtctatt 38887339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 4301005 - 4300941
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||||||    
T  4301005 tttgtgtccaagtgaaaaggtgttggttgctaaaatagatcttcatgaaaataagtgggtctatt 4300941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 17619140 - 17619204
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||||||    
T  17619140 tttgtgtccaagtgaaaaggtactggttgctaaaatagaccttcatgaaaatgagtgggtctatt 17619204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 54285811 - 54285875
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||| |||||||||| |||||||    
T  54285811 tttgtgtccaaatgaaaaggtgtaggttgctaaaatagaccttcataaaaatgagtgggtctatt 54285875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 27359841 - 27359895
Alignment:
Q  248 agtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  27359841 agtgaaaaggtgttgtttgctaaaatagaccttcatgaaaatgagtgggtctatt 27359895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 28422850 - 28422905
Alignment:
Q  247 aagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||    
T  28422850 aagtgaaaaggtgatggttgctaaaatagactttcataaaaatgagtgggtctatt 28422905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 40929858 - 40929917
Alignment:
Q  243 gtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||| ||||||||||||||||||||||||| || ||||| |||||||||| |||||||    
T  40929858 gtccaaatgaaaaggtgttggttgctaaaataaaccttcataaaaatgagtgggtctatt 40929917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 17615094 - 17615038
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtg 294  Q
    ||||||||||||||||||||||   ||||||||||||||| ||||| ||||||||||    
T  17615094 tttgtgtccaagtgaaaaggtgcaagttgctaaaatagaccttcataaaaatgagtg 17615038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 27317483 - 27317535
Alignment:
Q  250 tgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||| ||||||||||| || |||||||||||||| | |||||||    
T  27317483 tgaaaaggtgttgcttgctaaaataaaccttcatgaaaatgagcgggtctatt 27317535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 51341938 - 51341882
Alignment:
Q  246 caagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||| ||||||||||||||| |||||||||| ||||||| |||||||  |||||||    
T  51341938 caagtaaaaaggtgttggttgttaaaatagaccttcatgagaatgagtaggtctatt 51341882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 1602511 - 1602477
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaa 272  Q
    |||||||| ||||||||||||||||||||||||||    
T  1602511 tttgtgtcaaagtgaaaaggtgttggttgctaaaa 1602477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 29032801 - 29032864
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||| |||   |||||||||||||||| ||||| ||||||| || |||||||    
T  29032801 tttgtgtccaagtgaaa-ggtacaggttgctaaaatagaccttcataaaaatgaatgggtctatt 29032864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 42026968 - 42026904
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||    
T  42026968 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 42026904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 42031689 - 42031753
Alignment:
Q  238 tttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||    
T  42031689 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 42031753  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 34269072 - 34269125
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcat 283  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  34269072 caagggtctttgtgtccaaatgaaaaggtgttgcttgctaaaatagaccttcat 34269125  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 34275307 - 34275360
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcat 283  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  34275307 caagggtctttgtgtccaaatgaaaaggtgttgcttgctaaaatagaccttcat 34275360  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 34268056 - 34267984
Alignment:
Q  230 caagggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||| || || |||  ||||| |||||||    
T  34268056 caagggtttttgtgtccaagtgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctatt 34267984  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 16802050 - 16801981
Alignment:
Q  233 gggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||| ||| ||||||||||||||||||    |||||||||||||| |||||||||||||||| |||||||    
T  16802050 gggtatttttgtccaagtgaaaaggtgccccttgctaaaatagaccttcatgaaaatgagtgggtctatt 16801981  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 17239407 - 17239466
Alignment:
Q  243 gtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||| |||||||||| |  |||||||||||||| ||||| |||||||||| |||||||    
T  17239407 gtccaaatgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctatt 17239466  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 24790841 - 24790891
Alignment:
Q  233 gggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcat 283  Q
    |||| |||||||||||||||||| |||||| || ||||||||||| |||||    
T  24790841 gggtttttgtgtccaagtgaaaaagtgttgctttctaaaatagaccttcat 24790891  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 16802673 - 16802742
Alignment:
Q  233 gggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||| || |||||||||||||||||  |  |||||||||||||| || || |||||||||| |||||||    
T  16802673 gggtccttttgtccaagtgaaaaggtacttcttgctaaaatagacctttataaaaatgagtgggtctatt 16802742  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 17238674 - 17238605
Alignment:
Q  233 gggtctttgtgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    ||||||||  ||||||  ||||||||| |  |||||||||||||| ||||| |||||||||| |||||||    
T  17238674 gggtcttttggtccaaacgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctatt 17238605  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 34361278 - 34361226
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtg 294  Q
    ||||||||| |||||| |||||||||||||||| || ||||| ||||| ||||    
T  34361278 tgtccaagtcaaaaggcgttggttgctaaaataaaccttcataaaaataagtg 34361226  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 47722009 - 47722057
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatg 290  Q
    |||||||||||||||  ||||||||||||||||  ||||||| ||||||    
T  47722009 tgtccaagtgaaaagccgttggttgctaaaatactcattcataaaaatg 47722057  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 47729001 - 47729049
Alignment:
Q  242 tgtccaagtgaaaaggtgttggttgctaaaatagacattcatgaaaatg 290  Q
    |||||||||||||||  ||||||||||||||||  ||||||| ||||||    
T  47729001 tgtccaagtgaaaagccgttggttgctaaaatactcattcataaaaatg 47729049  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 45396 - 45341
Alignment:
Q  247 aagtgaaaaggtgttggttgctaaaatagacattcatgaaaatgagtgagtctatt 302  Q
    |||||||||||||    |||||||||||||| |||||||||||||||| |||||||    
T  45396 aagtgaaaaggtgcatcttgctaaaatagaccttcatgaaaatgagtgggtctatt 45341  T

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