View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6325_low_5 (Length: 356)

Name: NF6325_low_5
Description: NF6325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6325_low_5
NF6325_low_5
[»] chr5 (21 HSPs)
chr5 (1-149)||(6593535-6593683)
chr5 (229-356)||(6593328-6593455)
chr5 (277-352)||(7985002-7985078)
chr5 (274-356)||(17258842-17258924)
chr5 (277-349)||(16457940-16458013)
chr5 (281-356)||(8089965-8090040)
chr5 (288-353)||(39105496-39105562)
chr5 (265-346)||(10907417-10907498)
chr5 (291-348)||(41016614-41016671)
chr5 (288-352)||(499704-499768)
chr5 (277-356)||(37526161-37526240)
chr5 (277-356)||(37588322-37588401)
chr5 (277-356)||(37690598-37690677)
chr5 (274-352)||(11700337-11700415)
chr5 (290-352)||(29845410-29845471)
chr5 (275-356)||(37611175-37611256)
chr5 (275-356)||(37787905-37787986)
chr5 (324-356)||(3970689-3970721)
chr5 (268-356)||(10125671-10125759)
chr5 (274-310)||(11104980-11105016)
chr5 (272-356)||(13264062-13264145)
[»] chr1 (20 HSPs)
chr1 (264-356)||(31517689-31517781)
chr1 (264-356)||(38170639-38170731)
chr1 (274-356)||(10199367-10199449)
chr1 (264-356)||(37593633-37593725)
chr1 (274-356)||(4445737-4445819)
chr1 (274-356)||(6292522-6292603)
chr1 (277-353)||(34290268-34290344)
chr1 (277-342)||(38001639-38001704)
chr1 (277-353)||(2777924-2778000)
chr1 (277-317)||(37617426-37617466)
chr1 (277-352)||(14443482-14443557)
chr1 (274-352)||(601074-601151)
chr1 (277-349)||(2295132-2295205)
chr1 (275-355)||(4920729-4920810)
chr1 (277-350)||(7119899-7119972)
chr1 (277-353)||(7941638-7941715)
chr1 (299-356)||(11639400-11639457)
chr1 (299-355)||(6031458-6031514)
chr1 (277-313)||(9572062-9572098)
chr1 (277-353)||(41195155-41195231)
[»] chr2 (20 HSPs)
chr2 (274-356)||(43529817-43529899)
chr2 (274-356)||(12313132-12313214)
chr2 (266-347)||(5902500-5902581)
chr2 (274-353)||(8017466-8017545)
chr2 (272-354)||(43199741-43199823)
chr2 (275-356)||(40158747-40158828)
chr2 (264-344)||(787373-787453)
chr2 (292-355)||(35378509-35378572)
chr2 (294-356)||(1647265-1647327)
chr2 (275-353)||(24347754-24347832)
chr2 (282-356)||(28677626-28677700)
chr2 (275-313)||(32837395-32837433)
chr2 (320-353)||(14220827-14220860)
chr2 (299-356)||(35379000-35379057)
chr2 (277-353)||(41293124-41293201)
chr2 (320-356)||(9174844-9174880)
chr2 (320-356)||(9395159-9395195)
chr2 (275-351)||(33256774-33256850)
chr2 (288-344)||(33503048-33503104)
chr2 (292-356)||(41817197-41817261)
[»] chr7 (12 HSPs)
chr7 (250-351)||(30535597-30535698)
chr7 (280-355)||(6824950-6825025)
chr7 (267-353)||(23214887-23214973)
chr7 (277-353)||(19302524-19302601)
chr7 (277-353)||(20526890-20526967)
chr7 (274-330)||(8094361-8094417)
chr7 (276-356)||(25670547-25670627)
chr7 (277-307)||(33287919-33287949)
chr7 (264-304)||(529443-529483)
chr7 (277-313)||(21568456-21568492)
chr7 (277-313)||(27288020-27288056)
chr7 (277-313)||(27863686-27863722)
[»] chr8 (13 HSPs)
chr8 (276-351)||(11376737-11376812)
chr8 (288-353)||(42893462-42893528)
chr8 (279-356)||(42215270-42215347)
chr8 (288-356)||(7646235-7646303)
chr8 (277-356)||(27754433-27754512)
chr8 (265-356)||(12851205-12851298)
chr8 (269-356)||(2458520-2458607)
chr8 (277-310)||(43717895-43717928)
chr8 (292-356)||(13459674-13459738)
chr8 (320-356)||(20672779-20672815)
chr8 (277-313)||(26771338-26771374)
chr8 (277-313)||(28763441-28763477)
chr8 (299-355)||(39392666-39392722)
[»] chr4 (13 HSPs)
chr4 (274-355)||(42461281-42461362)
chr4 (281-356)||(679747-679822)
chr4 (272-356)||(1137741-1137825)
chr4 (274-356)||(47800652-47800731)
chr4 (266-356)||(21043187-21043276)
chr4 (290-356)||(22662222-22662288)
chr4 (277-345)||(49939912-49939981)
chr4 (274-342)||(4071921-4071989)
chr4 (277-313)||(22030276-22030312)
chr4 (274-310)||(22471349-22471385)
chr4 (325-353)||(28614818-28614846)
chr4 (233-309)||(42866144-42866220)
chr4 (265-353)||(44319981-44320069)
[»] chr6 (8 HSPs)
chr6 (277-353)||(20368142-20368218)
chr6 (275-338)||(27693399-27693462)
chr6 (277-351)||(31813195-31813270)
chr6 (294-352)||(31624123-31624181)
chr6 (272-353)||(769170-769251)
chr6 (299-356)||(28641733-28641790)
chr6 (274-355)||(33116614-33116695)
chr6 (274-338)||(27595526-27595590)
[»] chr3 (16 HSPs)
chr3 (293-355)||(25453836-25453899)
chr3 (277-353)||(21367699-21367776)
chr3 (272-353)||(45541603-45541684)
chr3 (277-317)||(43046734-43046774)
chr3 (299-353)||(5391911-5391965)
chr3 (274-356)||(14548680-14548762)
chr3 (282-356)||(52267438-52267512)
chr3 (281-355)||(54837000-54837074)
chr3 (278-355)||(34954112-34954188)
chr3 (303-356)||(36101597-36101650)
chr3 (303-356)||(36139907-36139960)
chr3 (277-353)||(39980761-39980838)
chr3 (305-353)||(5396229-5396277)
chr3 (280-356)||(21574519-21574595)
chr3 (272-312)||(34958366-34958406)
chr3 (274-353)||(41057186-41057266)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 6593683 - 6593535
Alignment:
Q  1 agcataatcacatgtgacattgttatgtctgacactgacatgtttgacacaacttttatcagacatgttctttgctacaaagcttgtgatacgtattggg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6593683 agcataatcacatgtgacattgttatgtttgacactgacatgtttgacacaacttttatcagacatgttctttgctacaaagcttgtgatacgtattggg 6593584  T
Q  101 agagtttatggaaacggcttaagacatatattcataagtcattttcagc 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6593583 agagtttatggaaacggcttatgacatatattcataagtcattttcagc 6593535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 229 - 356
Target Start/End: Complemental strand, 6593455 - 6593328
Alignment:
Q  229 gagcctgtctggatttgtttgtttgagttaattctctggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataa 328  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6593455 gagcctgtctggatttgtttgtttgagttaattcactggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaacaa 6593356  T
Q  329 gctcttttcagcttattttcataagctc 356  Q
    ||||||||||||||||||||||||||||    
T  6593355 gctcttttcagcttattttcataagctc 6593328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 7985078 - 7985002
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgt-gttaataagctcttttcagcttattttcataa 352  Q
    ||||||||||||||||||||  ||| ||||||||||| ||| || ||| ||||||| ||||||||||||||||||||    
T  7985078 ttgtgagactatttgggagagcttaagaaaacagcttgtgacgttgttcataagctgttttcagcttattttcataa 7985002  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 17258842 - 17258924
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||| | | ||||||||||  |||||||| ||||| |||  |||| ||||||| ||||||||||||||||||||||||    
T  17258842 cacttgtgacattctttgggagaacctatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctc 17258924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 16457940 - 16458013
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga-tgtgttaataagctcttttcagcttattttca 349  Q
    |||||||||| |||||||||| ||||||||||||||| |||  || || ||||||||||||||| |||||||||    
T  16457940 ttgtgagactgtttgggagaacttatgaaaacagcttatgacagttttcataagctcttttcagtttattttca 16458013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 8090040 - 8089965
Alignment:
Q  281 gagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||| ||||  ||||||||||| ||| |||| | ||  |||||| ||||||||||||||||||||||||    
T  8090040 gagactatttgagagagcttatgaaaacaacttatgatatattcctaagctgttttcagcttattttcataagctc 8089965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 39105562 - 39105496
Alignment:
Q  288 tttgggagaatttatgaaaacagcttttga-tgtgttaataagctcttttcagcttattttcataag 353  Q
    |||||||||||||||||||||||||| |||   |||| ||||||| |||| ||||||||||||||||    
T  39105562 tttgggagaatttatgaaaacagcttatgacattgttcataagctatttttagcttattttcataag 39105496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 10907498 - 10907417
Alignment:
Q  265 tggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattt 346  Q
    |||||||||||||||||||||| ||||| |||  ||||||||||| ||| ||   ||| |||||||| ||||| ||||||||    
T  10907498 tggcatgaacacttgtgagactgtttggaagagcttatgaaaacaacttatgtcatgtcaataagctgttttcggcttattt 10907417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 41016671 - 41016614
Alignment:
Q  291 gggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttc 348  Q
    |||||||||||||||||||| || |||| |||| ||||||||| |||||||| |||||    
T  41016671 gggagaatttatgaaaacaggttatgatatgtttataagctctcttcagcttgttttc 41016614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 499704 - 499768
Alignment:
Q  288 tttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataa 352  Q
    |||||||||| ||||||||||||||| |||  |||||| ||| | |||||||||||||| |||||    
T  499704 tttgggagaacttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 499768  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 37526161 - 37526240
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||||| |||| ||||  ||||||| ||| | | |||  |||||||||||| |||||||||||||| |||||||||    
T  37526161 ttgtgagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctc 37526240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 37588322 - 37588401
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||||| |||| ||||  ||||||| ||| | | |||  |||||||||||| |||||||||||||| |||||||||    
T  37588322 ttgtgagactgtttgagagagcttatgaatacaacctatgaaatgttaataagctgttttcagcttatttccataagctc 37588401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 37690598 - 37690677
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||||| |||| ||||  ||||||| ||| | | |||  |||||||||||| |||||||||||||| |||||||||    
T  37690598 ttgtgagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctc 37690677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 11700337 - 11700415
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataa 352  Q
    ||||||||||||||||  ||||| |||||| ||||| ||| |||  |||  ||||||| ||||||| ||||||||||||    
T  11700337 cacttgtgagactattgaggagagtttatggaaacaacttatgacatgtccataagctgttttcagattattttcataa 11700415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 29845410 - 29845471
Alignment:
Q  290 tgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataa 352  Q
    |||||||| ||||||||| ||||| ||||  ||||||||||| |||||||||||| |||||||    
T  29845410 tgggagaacttatgaaaa-agcttatgatacgttaataagctgttttcagcttatattcataa 29845471  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 37611175 - 37611256
Alignment:
Q  275 acttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||||| | |||| ||||  ||||||||||| ||| |||  |||| ||||||| ||||||| |||||| |||||||||    
T  37611175 acttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctc 37611256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 37787905 - 37787986
Alignment:
Q  275 acttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||||| | |||| ||||  ||||||||||| ||| |||  |||| ||||||| ||||||| |||||| |||||||||    
T  37787905 acttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctc 37787986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 3970689 - 3970721
Alignment:
Q  324 aataagctcttttcagcttattttcataagctc 356  Q
    |||||||| ||||||||||||||||||||||||    
T  3970689 aataagctattttcagcttattttcataagctc 3970721  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 10125671 - 10125759
Alignment:
Q  268 catgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||| ||||||||| | | | || ||||| ||||| ||||| ||| |||  |||| ||||| | ||||||||||||||||||||||||    
T  10125671 catgagcacttgtgacattgtctgagagaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttattttcataagctc 10125759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 11105016 - 11104980
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacag 310  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  11105016 cacttgtgatactatttgggagaacttatgaaaacag 11104980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 13264062 - 13264145
Alignment:
Q  272 aacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||| |||||| ||||| ||| |||||| ||||||||| ||   | || ||||||| ||||||||||||||| ||||||||    
T  13264062 aacacttgcgagactgtttggaagagtttatggaaacagcttatgccatattcataagctgttttcagcttatttt-ataagctc 13264145  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 31517689 - 31517781
Alignment:
Q  264 ctggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||| | ||||||||||||| |||||||||| |||| |||||| ||  |||  |||| ||||||| ||||||||||||||||||||||||    
T  31517689 ctggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctc 31517781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 38170639 - 38170731
Alignment:
Q  264 ctggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||||||||||||||||||  ||||||||  ||||||||||||||| |||  |||| ||||| | |||||||||| ||||| |||||||    
T  38170639 ctggcatgaacacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagcttgttttcctaagctc 38170731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 10199367 - 10199449
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||| |||||||||||||| | ||||||| ||||| |||  |||| ||||| | ||||||||||||||||||||||||    
T  10199367 cacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctc 10199449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 37593633 - 37593725
Alignment:
Q  264 ctggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||| ||||||||| ||||| ||||||| || | ||||| ||| ||| |||  |||| ||||||| ||||||||||||||||||||||||    
T  37593633 ctggcataaacacttgttagactgtttgggaaaactaatgaacacaacttatgacatgttcataagctgttttcagcttattttcataagctc 37593725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 4445819 - 4445737
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||||| ||||||||||||||||||| |||||| | |  |||| | ||||| |||||| |||||||||| ||||||    
T  4445819 cacttgtgagactgtttgggagaatttatgaaagcagcttataacatgttcagaagctgttttcaacttattttcacaagctc 4445737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 6292603 - 6292522
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||| ||||| | ||||||||||||| | |||||||||| |||  |||| ||||||| ||||||||||||||||||||||||    
T  6292603 cacttttgagattgtttgggagaattttt-aaaacagcttatgacatgttcataagctgttttcagcttattttcataagctc 6292522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 34290344 - 34290268
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    |||||| ||||||||||||||||||| |||| ||||| |||  | || ||||| | |||||||||||||||||||||    
T  34290344 ttgtgaaactatttgggagaatttattaaaaaagcttatgacatattcataagttgttttcagcttattttcataag 34290268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 38001704 - 38001639
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagctt 342  Q
    |||||||||| |||||||||| ||||||||||||||| |||  |||| ||||| | ||||||||||    
T  38001704 ttgtgagactgtttgggagaacttatgaaaacagcttatgacctgttcataagttgttttcagctt 38001639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 2778000 - 2777924
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    |||||||||| ||| |||||| |||||||| || ||| ||| || || ||||||  |||||||||||||||||||||    
T  2778000 ttgtgagactgtttaggagaacttatgaaaccaacttatgacgtattcataagccgttttcagcttattttcataag 2777924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 37617426 - 37617466
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga 317  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  37617426 ttgtgagactgtttgcgagaatttatgaaaacagcttttga 37617466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 14443557 - 14443482
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataa 352  Q
    |||||||||||| ||  |||||||||||||||||||||| |  ||||  |||| | |||||| |||||||||||||    
T  14443557 ttgtgagactatatgaaagaatttatgaaaacagcttttaacatgttcgtaagttgttttcaccttattttcataa 14443482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 352
Target Start/End: Complemental strand, 601151 - 601074
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataa 352  Q
    ||||| ||||||| ||||||||||| || ||||||| ||| |||  ||||  |||||| ||||||||||||||||||||    
T  601151 cacttttgagactgtttgggagaatctaagaaaacaacttatgacatgttg-taagctattttcagcttattttcataa 601074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 349
Target Start/End: Complemental strand, 2295205 - 2295132
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga-tgtgttaataagctcttttcagcttattttca 349  Q
    |||||||||| |||||||||| ||||||||||||||| |||   | || ||||||||| |||| ||||||||||    
T  2295205 ttgtgagactgtttgggagaacttatgaaaacagcttatgacaattttcataagctctattcaacttattttca 2295132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 4920729 - 4920810
Alignment:
Q  275 acttgtgagactatttgggagaattt-atgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagct 355  Q
    |||||||||||| ||||||||||||| |||||||||| || |||  ||||  || | | |||| ||||||||||||||||||    
T  4920729 acttgtgagactctttgggagaatttaatgaaaacaggttatgacatgttcttaggttgtttttagcttattttcataagct 4920810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 7119899 - 7119972
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcat 350  Q
    |||||||||| ||||  |||||||||||||||| ||| |||| | || |||||||  ||||||||||| |||||    
T  7119899 ttgtgagactgtttgcaagaatttatgaaaacaacttatgatatcttcataagctgctttcagcttatattcat 7119972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 7941715 - 7941638
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga-tgtgttaataagctcttttcagcttattttcataag 353  Q
    |||||||||| ||||| |||||||||||||||||||| |||   ||||   ||||| |||||| ||||||||||||||    
T  7941715 ttgtgagactgtttggaagaatttatgaaaacagcttatgacattgttccgaagctattttcaacttattttcataag 7941638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 11639400 - 11639457
Alignment:
Q  299 ttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||||||| |||  |||  ||||||| |||| |||||||||||||||||||    
T  11639400 ttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctc 11639457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 6031458 - 6031514
Alignment:
Q  299 ttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagct 355  Q
    ||||||||||||||| ||| ||| | ||||| |||||||| ||||||||| ||||||    
T  6031458 ttatgaaaacagcttatgacgtgctcataagttcttttcaccttattttcgtaagct 6031514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 9572062 - 9572098
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagctt 313  Q
    |||||||||| |||||||||| |||||||||||||||    
T  9572062 ttgtgagactgtttgggagaacttatgaaaacagctt 9572098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 41195155 - 41195231
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    |||||| ||| |||||||||| || |  ||| ||||| |||  | |||||||||| |||||||||||||||||||||    
T  41195155 ttgtgatactgtttgggagaacttttataaatagcttatgacattttaataagcttttttcagcttattttcataag 41195231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 43529817 - 43529899
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||| ||| ||| |||||||||||||||||||||||||| ||   |||| ||||||| ||||||| ||||||||||||||||    
T  43529817 cacttctgacactgtttgggagaatttatgaaaacagcttatgccatgttcataagctattttcagtttattttcataagctc 43529899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 12313132 - 12313214
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||| | |||||||||||||||||||||||||| ||   |||| ||||| |  ||||| |||||||||||||||||    
T  12313132 cacttgtgagattgtttgggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctc 12313214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 5902500 - 5902581
Alignment:
Q  266 ggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttatttt 347  Q
    ||||| ||||||||||||||| ||||| |||| ||||||||||||||| |||  |||| |||| || |||||||||| ||||    
T  5902500 ggcataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataaactgttttcagcttgtttt 5902581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 8017545 - 8017466
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    |||||||| || |||||||||||| ||||||||||||||| |||| |||| ||||  | ||||| || ||||||||||||    
T  8017545 cacttgtgcgattatttgggagaacttatgaaaacagcttatgatatgttcataatttgttttctgcgtattttcataag 8017466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 43199741 - 43199823
Alignment:
Q  272 aacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagc 354  Q
    ||||||||||||||| |||||||||| ||| ||| ||| ||| |||  |||| ||||| | ||||||||||| ||||||||||    
T  43199741 aacacttgtgagactgtttgggagaagttacgaatacaacttgtgacatgtttataagttgttttcagcttaatttcataagc 43199823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 40158828 - 40158747
Alignment:
Q  275 acttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||||  ||||| ||| ||||||||||||||| |||  |||| ||||| | ||||||||||| || |||||||||    
T  40158828 acttgtgagactgattgggggaacttatgaaaacagcttatgacatgtttataagttgttttcagcttaattacataagctc 40158747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 787453 - 787373
Alignment:
Q  264 ctggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttat 344  Q
    ||||||| | ||||||||| ||| |||| ||||| ||||||||||||||| |||  |||  ||||||| ||||||||||||    
T  787453 ctggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 35378509 - 35378572
Alignment:
Q  292 ggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagct 355  Q
    |||||| ||||||||||||||  |||  |||| ||||| | |||||||||||||||||||||||    
T  35378509 ggagaacttatgaaaacagctgatgacttgttcataagttattttcagcttattttcataagct 35378572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 1647327 - 1647265
Alignment:
Q  294 agaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||| ||||||||||||||| |||  || | ||||||| |||||||||||||| |||||||||    
T  1647327 agaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctc 1647265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 24347832 - 24347754
Alignment:
Q  275 acttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    ||||||||||||||||  ||||| |||||||| || ||| ||||  ||| ||||||  | |||||||||||||||||||    
T  24347832 acttgtgagactatttcagagaacttatgaaagcaacttatgataggttcataagccatattcagcttattttcataag 24347754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 28677626 - 28677700
Alignment:
Q  282 agactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||| |||||||||| ||||||||||||||| |||  | || ||||| | ||||| |||||||| |||||||||    
T  28677626 agactgtttgggagaacttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagctc 28677700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 32837433 - 32837395
Alignment:
Q  275 acttgtgagactatttgggagaatttatgaaaacagctt 313  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  32837433 acttgtgagactgtttgggagaacttatgaaaacagctt 32837395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 14220827 - 14220860
Alignment:
Q  320 tgttaataagctcttttcagcttattttcataag 353  Q
    |||| |||||||||||||||||||||||||||||    
T  14220827 tgtttataagctcttttcagcttattttcataag 14220860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 35379000 - 35379057
Alignment:
Q  299 ttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||||||  |||  |||| ||||| | ||||||||||||||||||||||||    
T  35379000 ttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctc 35379057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 41293124 - 41293201
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgt-taataagctcttttcagcttattttcataag 353  Q
    ||||||||||||||||||||| |||| |||||||||| |||  | |   ||||||| |||||||||||| ||||||||    
T  41293124 ttgtgagactatttgggagaacttataaaaacagcttatgacatttcgcataagctgttttcagcttatattcataag 41293201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 9174880 - 9174844
Alignment:
Q  320 tgttaataagctcttttcagcttattttcataagctc 356  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  9174880 tgttcataagctattttcagcttattttcataagctc 9174844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 9395195 - 9395159
Alignment:
Q  320 tgttaataagctcttttcagcttattttcataagctc 356  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  9395195 tgtttataagctgttttcagcttattttcataagctc 9395159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 33256850 - 33256774
Alignment:
Q  275 acttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcata 351  Q
    |||| ||||| | |||||||||  ||||||||||||||| |||  |||| |||| || || ||||||||||||||||    
T  33256850 acttctgagaatttttgggagagcttatgaaaacagcttatgacatgttcataaactgttctcagcttattttcata 33256774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 33503104 - 33503048
Alignment:
Q  288 tttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttat 344  Q
    ||||||||||||||||||| |||||| |||  | || ||||||| ||||||||||||    
T  33503104 tttgggagaatttatgaaatcagcttatgacattttcataagctattttcagcttat 33503048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 41817261 - 41817197
Alignment:
Q  292 ggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||||||||||||| ||| |||  |||| ||||  | |||||||||||||| |||||||||    
T  41817261 ggagaatttatgaaaacatcttatgacatgttgataatttgttttcagcttatttccataagctc 41817197  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 351
Target Start/End: Complemental strand, 30535698 - 30535597
Alignment:
Q  250 tttgagttaattctctggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttca 349  Q
    ||||||||||||  ||| ||| |||||||| |||||| ||| |||||| ||||||||||| ||| |||| ||||  |||||| ||||||| |||||||||    
T  30535698 tttgagttaatttactgacataaacacttgagagactgttttggagaacttatgaaaacaacttatgatatgttcgtaagctgttttcaggttattttca 30535599  T
Q  350 ta 351  Q
    ||    
T  30535598 ta 30535597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 6825025 - 6824950
Alignment:
Q  280 tgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagct 355  Q
    |||||||||||| ||| | || ||||| ||| || ||||||||| ||||| || ||||||||||||||||||||||    
T  6825025 tgagactatttgagagtacttgtgaaaccaggttatgatgtgttcataagttcctttcagcttattttcataagct 6824950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 353
Target Start/End: Complemental strand, 23214973 - 23214887
Alignment:
Q  267 gcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    |||| ||||||| ||||||| |||| ||||||||||||||||| ||| |||  | |  ||||||||| |||||||||| ||||||||    
T  23214973 gcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacatttccataagctctattcagcttatgttcataag 23214887  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 19302524 - 19302601
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga-tgtgttaataagctcttttcagcttattttcataag 353  Q
    |||||||| |||||||||||||||||||||||||||| |||   | || |||| || |||||| ||||||||||||||    
T  19302524 ttgtgagaatatttgggagaatttatgaaaacagcttatgacaattttcataaacttttttcaacttattttcataag 19302601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 20526890 - 20526967
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgt-gttaataagctcttttcagcttattttcataag 353  Q
    |||||||||| |||| ||||| | ||||||||||||| |||  | ||| ||||| |||||||||||||||||||||||    
T  20526890 ttgtgagactgtttgagagaactgatgaaaacagcttatgagattgtttataagatcttttcagcttattttcataag 20526967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 8094417 - 8094361
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagc 330  Q
    |||||||||||||||||| |||| |||||||||||||||| |||  |||| ||||||    
T  8094417 cacttgtgagactatttgagagattttatgaaaacagcttatgacatgtttataagc 8094361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 25670547 - 25670627
Alignment:
Q  276 cttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||| |||| || || ||||||||||| ||| |||  |||||||||  | ||||||||||||||||| ||||||    
T  25670547 cttgtgagactgtttgagaaaacttatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagctc 25670627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 307
Target Start/End: Complemental strand, 33287949 - 33287919
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaa 307  Q
    |||||||||||||||||||||||||||||||    
T  33287949 ttgtgagactatttgggagaatttatgaaaa 33287919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 529483 - 529443
Alignment:
Q  264 ctggcatgaacacttgtgagactatttgggagaatttatga 304  Q
    ||||||| |||||||||||| ||||||||||||| ||||||    
T  529483 ctggcataaacacttgtgaggctatttgggagaacttatga 529443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 21568456 - 21568492
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagctt 313  Q
    |||||||||| |||||||||| |||||||||||||||    
T  21568456 ttgtgagactgtttgggagaacttatgaaaacagctt 21568492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 27288056 - 27288020
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagctt 313  Q
    |||||||||||||||| |||| |||||||||||||||    
T  27288056 ttgtgagactatttggaagaacttatgaaaacagctt 27288020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 27863686 - 27863722
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagctt 313  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  27863686 ttgtgagactatttgagagaacttatgaaaacagctt 27863722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 351
Target Start/End: Complemental strand, 11376812 - 11376737
Alignment:
Q  276 cttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcata 351  Q
    |||||||||||||||||||||| ||||||||| ||||| |||  ||||||||   | |||||||||||||||||||    
T  11376812 cttgtgagactatttgggagaacttatgaaaatagcttgtgacatgttaatatcttgttttcagcttattttcata 11376737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 42893462 - 42893528
Alignment:
Q  288 tttgggagaatttatgaaaacagcttttgatgtg-ttaataagctcttttcagcttattttcataag 353  Q
    |||||||||| |||| |||||||||| ||||| | |||||||||| |||||||||||||||||||||    
T  42893462 tttgggagaacttataaaaacagcttatgatgcgcttaataagcttttttcagcttattttcataag 42893528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 42215270 - 42215347
Alignment:
Q  279 gtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||| ||| |||||||||| | ||||||||||||| |||  |||| ||||||| |||||||||||||| |||||||||    
T  42215270 gtgacactgtttgggagaactaatgaaaacagcttatgacttgttcataagctgttttcagcttatttacataagctc 42215347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 7646303 - 7646235
Alignment:
Q  288 tttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||||||||||||| |||| |||  |||| || |||| |||||||||||||| |||||||||    
T  7646303 tttgggagaatttatgaaaactgcttatgacatgttgatcagctattttcagcttatttccataagctc 7646235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 356
Target Start/End: Complemental strand, 27754512 - 27754433
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||||||||||||| |||||||||||| || |||  || | ||||| |   ||||||||||||||||||||||    
T  27754512 ttgtgagactatttgggagaacttatgaaaacagtttatgacatgattataagttgcgttcagcttattttcataagctc 27754433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 12851298 - 12851205
Alignment:
Q  265 tggcatgaacacttgtga--gactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||| |||||||||||  |||| ||||||| || ||||||||||||||| | |  |||| ||||| | ||||| ||||||||||||||||||    
T  12851298 tggcataaacacttgtgatagactgtttgggaaaacttatgaaaacagcttataacatgttcataagatgttttcggcttattttcataagctc 12851205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 2458520 - 2458607
Alignment:
Q  269 atgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||||||||| | | ||| |||||| ||||||| ||||||| ||   |||| ||||||| ||||||| |||||| |||||||||    
T  2458520 atgaacacttgtgacattcttttggagaacttatgaagacagcttatggcatgttcataagctgttttcagtttatttccataagctc 2458607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 43717895 - 43717928
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacag 310  Q
    ||||||||||||||||||||| ||||||||||||    
T  43717895 ttgtgagactatttgggagaacttatgaaaacag 43717928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 13459738 - 13459674
Alignment:
Q  292 ggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||| ||||||||||||||| |||  | || |||| || |||||||| |||||||||||||||    
T  13459738 ggagaacttatgaaaacagcttatgacattttcataaactgttttcagcctattttcataagctc 13459674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 20672815 - 20672779
Alignment:
Q  320 tgttaataagctcttttcagcttattttcataagctc 356  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  20672815 tgttcataagctgttttcagcttattttcataagctc 20672779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 26771374 - 26771338
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagctt 313  Q
    |||||||||| |||||||||| |||||||||||||||    
T  26771374 ttgtgagactgtttgggagaacttatgaaaacagctt 26771338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 28763477 - 28763441
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagctt 313  Q
    |||||||||| |||||||||| |||||||||||||||    
T  28763477 ttgtgagactgtttgggagaacttatgaaaacagctt 28763441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 39392666 - 39392722
Alignment:
Q  299 ttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagct 355  Q
    ||||||| | ||||| |||| ||| ||||| || |||||||||||||||||||||||    
T  39392666 ttatgaataaagcttgtgatatgtcaataatctgttttcagcttattttcataagct 39392722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 42461362 - 42461281
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagct 355  Q
    ||||| ||||||| |||||||||| ||||||||| ||| | ||| ||||| ||||| |  ||||||||||||||||||||||    
T  42461362 cacttatgagactgtttgggagaacttatgaaaatagcctatgacgtgttcataagttgatttcagcttattttcataagct 42461281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 679822 - 679747
Alignment:
Q  281 gagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||| |||| |||| ||||||||||| ||| |||| |||| |||| || |||||||| |||||||||||||||    
T  679822 gagactacttggtagaagttatgaaaacatcttatgatatgttcataaactgttttcagcatattttcataagctc 679747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 1137825 - 1137741
Alignment:
Q  272 aacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||| ||| ||| |||||| ||||||||||| ||| |||  |||| ||||| | ||||||| |||||| |||||||||    
T  1137825 aacacttgtgacactgtttaggagaacttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagctc 1137741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 47800731 - 47800652
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||| |||||| |||| ||| | |||||||||||||||   || |||| ||||||  ||||||||||||||||||||||||    
T  47800731 cacttgcgagactgtttgagagtaattatgaaaacagctt---atatgtttataagcggttttcagcttattttcataagctc 47800652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 356
Target Start/End: Original strand, 21043187 - 21043276
Alignment:
Q  266 ggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||| |||||||||||| |||||||||  ||||| ||||||||| |||   ||| ||||||| |||||||  |||||||||| ||||    
T  21043187 ggcatgaa-acttgtgagactgtttgggagaggttatggaaacagcttatgacacgttcataagctgttttcagtgtattttcatatgctc 21043276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 22662222 - 22662288
Alignment:
Q  290 tgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    |||||||| ||||||||| | ||| |||| |||| ||||||| |||||||||||||| |||| ||||    
T  22662222 tgggagaacttatgaaaaaaacttatgatatgttcataagctattttcagcttatttccatacgctc 22662288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 49939912 - 49939981
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga-tgtgttaataagctcttttcagcttatt 345  Q
    |||||||||||||||| |||| ||||||||| ||||| |||   |||| ||||||| |||||||||||||    
T  49939912 ttgtgagactatttggaagaacttatgaaaagagcttatgacattgttcataagctgttttcagcttatt 49939981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 4071989 - 4071921
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagctt 342  Q
    ||||||||||||| |||| ||||  ||||||||||||||| |||| ||||  |||| | ||||||||||    
T  4071989 cacttgtgagactgtttgagagagcttatgaaaacagcttatgatttgttggtaagttgttttcagctt 4071921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 22030312 - 22030276
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagctt 313  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  22030312 ttgtgagcctatttgggagaacttatgaaaacagctt 22030276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 22471385 - 22471349
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacag 310  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  22471385 cacttgtgagactgtttgggagaacttatgaaaacag 22471349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Original strand, 28614818 - 28614846
Alignment:
Q  325 ataagctcttttcagcttattttcataag 353  Q
    |||||||||||||||||||||||||||||    
T  28614818 ataagctcttttcagcttattttcataag 28614846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 42866220 - 42866144
Alignment:
Q  233 ctgtctggatttgtttgtttgagttaattctctggcatgaacacttgtgagactatttgggagaatttatgaaaaca 309  Q
    |||| |||||| | ||||||||||| |||  ||||||| ||||| | ||||||| |||||||||| ||||| |||||    
T  42866220 ctgtttggattggcttgtttgagtttatttactggcataaacacctttgagactctttgggagaacttatgtaaaca 42866144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 44320069 - 44319981
Alignment:
Q  265 tggcatgaacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    |||||| |||| |||||||||| |||||||||  |||||||||||  || |||||| |  || |||| |||||| || |||||||||||    
T  44320069 tggcataaacaattgtgagactgtttgggagagcttatgaaaacaaattatgatgtatccattagctattttcaactaattttcataag 44319981  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 20368142 - 20368218
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    |||| |||||||||||||||| ||||||||||| ||| |||  |||| |||||||  ||||| ||||||||||||||    
T  20368142 ttgtaagactatttgggagaacttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataag 20368218  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 27693399 - 27693462
Alignment:
Q  275 acttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttca 338  Q
    ||||||||||||||||| ||||||||||| ||||| ||| |||  |||| ||||||| ||||||    
T  27693399 acttgtgagactatttgagagaatttatggaaacaacttatgacatgttcataagctattttca 27693462  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 351
Target Start/End: Complemental strand, 31813270 - 31813195
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga-tgtgttaataagctcttttcagcttattttcata 351  Q
    ||||||||||||||||||||| |||||||||  |||| |||   |||| ||||||  |||||||||||||||||||    
T  31813270 ttgtgagactatttgggagaacttatgaaaattgcttatgagattgttcataagccgttttcagcttattttcata 31813195  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 31624181 - 31624123
Alignment:
Q  294 agaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataa 352  Q
    |||| ||||||||||||||| |||  |||| ||||||| |||||| |||||||||||||    
T  31624181 agaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 31624123  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 769251 - 769170
Alignment:
Q  272 aacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    ||||||||||||||| |||||  ||| ||||||||||| ||| |||  |||| ||||||| |||||| |||| |||| ||||    
T  769251 aacacttgtgagactgtttggatgaacttatgaaaacatcttatgacatgttcataagctgttttcaacttactttcttaag 769170  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 28641733 - 28641790
Alignment:
Q  299 ttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||||||| | |  |||| ||||||| |||| |||||||||||||||||||    
T  28641733 ttatgaaaacagcttataacatgttcataagctgtttttagcttattttcataagctc 28641790  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 33116695 - 33116614
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagct 355  Q
    ||||||||||||| |||| | ||||||||||||||| ||| |||  |||  |||| ||||||| || |||||| ||||||||    
T  33116695 cacttgtgagactgtttgagggaatttatgaaaacaacttatgacatgtgcataaactcttttaagtttatttccataagct 33116614  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 27595526 - 27595590
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttca 338  Q
    ||||| ||||||| |||||||||||||||| ||||| ||| |||  |||| ||||||| ||||||    
T  27595526 cacttatgagactgtttgggagaatttatggaaacaacttatgacatgttcataagctattttca 27595590  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 25453836 - 25453899
Alignment:
Q  293 gagaatttatgaaaacagcttttgatg-tgttaataagctcttttcagcttattttcataagct 355  Q
    ||||||||||||||||||||| |||   |||| | |||||||||||||||||||||||||||||    
T  25453836 gagaatttatgaaaacagcttatgaaaatgttcacaagctcttttcagcttattttcataagct 25453899  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 21367776 - 21367699
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga-tgtgttaataagctcttttcagcttattttcataag 353  Q
    ||||| |||| |||||||||| ||||||||||||||| |||   |||| | ||||| |||||||||||||||||||||    
T  21367776 ttgtgggactgtttgggagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataag 21367699  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 45541684 - 45541603
Alignment:
Q  272 aacacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    ||||||||| ||||| ||| | |||| ||||||||||||||| |||  |||| ||||||| ||||||| ||||| |||||||    
T  45541684 aacacttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcataagctgttttcaggttattctcataag 45541603  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 43046774 - 43046734
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga 317  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  43046774 ttgtgagactgtttgggagaacttatgaaaacagcttttga 43046734  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 5391965 - 5391911
Alignment:
Q  299 ttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    ||||||||||||||| |||  |||| ||||||| |||||| ||||||||||||||    
T  5391965 ttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataag 5391911  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 14548680 - 14548762
Alignment:
Q  274 cacttgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||||| |||| ||||  ||||||||||| | | |||  | |||||| ||| |||||||||||||| |||||||||    
T  14548680 cacttgtgagactgtttgagagagcttatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagctc 14548762  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 52267512 - 52267438
Alignment:
Q  282 agactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||| | |||||||||||||||||||| |||  ||||  ||||||  ||| ||||||| |||||||||||    
T  52267512 agactatttcgaagaatttatgaaaacagcttatgacttgtttttaagctggtttaagcttatcttcataagctc 52267438  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 54837000 - 54837074
Alignment:
Q  281 gagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagct 355  Q
    |||||| ||||| |||||||||||||||||||| |||  |||| ||||  | ||||| ||||||||| |||||||    
T  54837000 gagactgtttggaagaatttatgaaaacagcttatgacatgttcataacttgttttccgcttatttttataagct 54837074  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 34954188 - 34954112
Alignment:
Q  278 tgtgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagct 355  Q
    ||||| ||||||||| |||| || ||||||||||| | ||  |||| || |||| |||||||||||||||||||||||    
T  34954188 tgtgacactatttggaagaacttgtgaaaacagctat-gacatgttcatgagctgttttcagcttattttcataagct 34954112  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 36101650 - 36101597
Alignment:
Q  303 gaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||| |||  |||| | ||||| ||||||||||||||||||||||||    
T  36101650 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctc 36101597  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 36139960 - 36139907
Alignment:
Q  303 gaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||||||| |||  |||| | ||||| ||||||||||||||||||||||||    
T  36139960 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctc 36139907  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 39980838 - 39980761
Alignment:
Q  277 ttgtgagactatttgggagaatttatgaaaacagcttttga-tgtgttaataagctcttttcagcttattttcataag 353  Q
    |||||||||| |||  ||||| ||||||||||||||| ||| ||  || ||||||| |||||| ||||||||||||||    
T  39980838 ttgtgagactgtttaagagaacttatgaaaacagcttatgactggtttcataagcttttttcaacttattttcataag 39980761  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 5396277 - 5396229
Alignment:
Q  305 aaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    ||||||||| |||  |||||||||| | |||||||||||||||||||||    
T  5396277 aaacagcttatgacatgttaataaggtgttttcagcttattttcataag 5396229  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 21574595 - 21574519
Alignment:
Q  280 tgagactatttgggagaatttatgaaaacagcttttgatgtgttaataagctcttttcagcttattttcataagctc 356  Q
    ||||||| |||||||||  ||||||||||| ||| |||  |||| |||||||  ||| ||||||||| |||||||||    
T  21574595 tgagactgtttgggagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctc 21574519  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 34958406 - 34958366
Alignment:
Q  272 aacacttgtgagactatttgggagaatttatgaaaacagct 312  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  34958406 aacacttgtgacactatttgggagaacttgtgaaaacagct 34958366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 41057266 - 41057186
Alignment:
Q  274 cacttgtgagactatttgggagaatttatg-aaaacagcttttgatgtgttaataagctcttttcagcttattttcataag 353  Q
    ||||||||||||| ||||||||||||| || |||| ||||  |||  |||| ||||| | ||||||||||||| |||||||    
T  41057266 cacttgtgagactgtttgggagaatttgtgaaaaatagctcgtgacatgttcataagttattttcagcttattatcataag 41057186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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